Protein Info for mRNA_2931 in Rhodosporidium toruloides IFO0880

Name: 11299
Annotation: K06676 BRRN1, BRN1, CAPH condensin complex subunit 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 844 PF05786: Cnd2" amino acids 8 to 807 (800 residues), 552 bits, see alignment E=1.7e-169

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (844 amino acids)

>mRNA_2931 K06676 BRRN1, BRN1, CAPH condensin complex subunit 2 (Rhodosporidium toruloides IFO0880)
MPRRAPSPSSRRRSSLPSAPSTPRASLTHQQPRQPKFGVLAAAANRLRDVTATPRRSVSG
RAAQEGEQAPLVVESQRYEEWMKIATDNKITSTNTWNLALIDYFHDMSLLRNGDDNSINF
QKASCTLDGCVKIWTSRVDSVASETGKLLSGLGDKAGANGEGDADEEDGDGEEDAERQEK
RARKRAARQTSTLADDFSKLRIKAFDLEFTVDPLFKKTSADFDEGGAGGILMNHLGCDGN
MKVVFDAGDAKLECDEEDADADAEEEKKEDVEEEADVEVDISRLRARCLPQGLSPLTHMS
LCPSLSAFRFSADSSLSLSMLNLGSESDDESDAGGVAGGGLPQMTNGDGDFGGFDDHFAG
QEFGGGGDDFGGGEGGEVDFFADQFTPLGASNLGLPLPGPSGSTSSSGVGFGPIEPFDPR
LAPSRSDLVLSNAQDEEGEGGNVWELLDSRYGGKKGWAGPEHWKMRRGRVGGAAGGGEKG
GKKEEGEEDDAPTDAKPTRTKRDRAALVLDFSLPPATSSKELFLPAAPKSSITTSLSKKK
NEKAEEDWTLPEDYMFSSGMLLRLFLKPKTTLRMRRRPFPSGAGLDPSAALGGTNEAGAA
DVQFWAQAGGEGDAMGMGMGMEGDMGGMDPMDHDFGGGPDNDDDDPPPFDTQWLVSGDTD
DLPDPDADIDTDANLPDDLAAATEGQLRRVRPEQVTYAKRAKRVDVKKLKDSIWRELEEV
VVPVKQFPAAHVYDPTAPPPDPVADENASPAARPKKPKKSQRAEALVPVISSLRKQYPKE
KMDEISTSYLFICLLHLANEKGLRIQTPRPASEGAEEVGVEEGEEMRKLVGGLEGLRVLK
EVQA