Protein Info for mRNA_2990 in Rhodosporidium toruloides IFO0880

Name: 11358
Annotation: SUPERFAMILY--SSF52047

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1120 transmembrane" amino acids 770 to 770 (1 residues), see Phobius details amino acids 772 to 772 (1 residues), see Phobius details amino acids 816 to 824 (9 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1120 amino acids)

>mRNA_2990 SUPERFAMILY--SSF52047 (Rhodosporidium toruloides IFO0880)
MDLHSDGGSGAATPTLAKSSSSATFDLPPQVTDLDLLSLASSSPNPPGPHFTHHPPPHST
YSRHLGDFPPEIIALIIHHLYYSYVPYPTPFPCPDPYLELVPATPYEPSHLAQPLDTQAK
ETLASICLVDKTWSAEATRALWRRVSFGMPRAFESVLRTIEEYSGGQRVARPLRSDARGG
RGRSSEAANNSSLGLVGLELDEPVKGTGPGAEGGFAGGLKAALEAAVEEETRGRPLVSSP
PEERHPLPSHHSAPVEIANSFPPPAPLPTLDPADSPLLFTRAISFARFRTAGMKRTLRQG
SHERFVTPHRLVTLLKGTRYPRDKLVKPVVNKDDEDEEDEEERWSSSADESEGETPGGKK
KKKVAGQLCQVGFSEYMDSAITFEVLEELLFRGGYLAEYEEPEEPAFMPDFGSSESDLGV
GSRSPYFGATPGSHVPASPHEPFHYRHLASSHSRSPSTDRGSHRTRSSSISTSIAEEDET
MVDTDDDAPGSGSRTPVGRRPAHWMQRRPSGSSFAPPVSAPNGQMHPVGSPDEHMSSGAE
DLEDEEEMRGRERFGRGRGGLPTSQSASGLATPTESHPRGRPRFNRSLLPPHAFLTRSAS
LPAHAVPQLPQVRASQGQSSRPPFRHQSLSRASERSSSVPASVSGRWAPEPAPKRTVQVL
EGSLTMQPVRALDLCGCVSRVFVAGLEEFVKMYKCGPKALMPPPGMDTLGEEDEDDEMET
GYRTPSLRSVRMGFTEERILNRTFFPHLRRLGLASSLLPSDLLTSFVLSFPYLTHLDLAS
TLTSPMLLKGLALAGQKGIGGRPMRLKALSLARCRLITGAALLGLFCGDCPPLTTLAGLS
DDEDESWGSGEVVSELTDLSLFGDGTYPSPLEVPELRLVVSASPTFRSGRLRTLDLSSTP
MSDVILTELIPPQPNLMQLGLAHCRSITMHAVSTFLCTKANAVEILDLSHSCPSLVGQSI
SSRRRVTLGPPSMSIMELHAVLLSQCASLESSSPNPEEAQLLLALRQTNLRIVELDEKSL
ELVQGGAGDWKPVWGKGRRGWYVDTATTSTLTPYYSPSTRPRQLLHLPRSDSQRQALLKL
VDQNRSGLEVAWNPRKMEVLKGEGMLGYREGLYAYHSFAS