Protein Info for mRNA_3008 in Rhodosporidium toruloides IFO0880

Name: 11376
Annotation: HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1474 transmembrane" amino acids 356 to 377 (22 residues), see Phobius details amino acids 1414 to 1432 (19 residues), see Phobius details PF14566: PTPlike_phytase" amino acids 228 to 378 (151 residues), 132.7 bits, see alignment E=6.4e-43 amino acids 727 to 884 (158 residues), 121.1 bits, see alignment E=2.5e-39 amino acids 1152 to 1313 (162 residues), 134.7 bits, see alignment E=1.6e-43

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1474 amino acids)

>mRNA_3008 HMMPfam-Inositol hexakisphosphate-PF14566,SUPERFAMILY--SSF52799 (Rhodosporidium toruloides IFO0880)
MAGPGEDSPSTPQNQRRRTSAPAKHFIHSDLLNPTPLHSPTTLLKHSPFGTTSERGSPLT
RSGDSPHRRLSSAAPALPSLSLPTSSPSSSDQAPLNLARLASAVVPSRSGSVLSRGLILK
SDYRFVAAQPPASASHSPAQSASSSSSATASSTKNAVTGSLAPSSTPAGPSTDGGFHLSG
ATNLREGGYGVWGVAQPTATGVRSLLSLLRSRKSGGAKEGREVAWFVTREEPILYIGGQP
YVLREAAHPTDTYSISDRAENLEEIEARLKSDVLRESARYDGLVLVHDETRSGSILPTWV
SADEVLTARELFSQIRSEGYNVTYFRTPVARDQSPNDGYLDVYTGLLKRIPTSTALVFNC
GAGVVRSTFAMSVALIVRRKQLIEKGEEDPYGLVSTRTQQDEGEPMSPRERQNPRSALKV
LQAQSEQAARDRSLLRLMHVLSKCLPANSQTTILSLLSTQSTLLENLRSALLGNFDIILS
LLSTLDDGVTAKKVVDAIVDHCDAMVNLRESITEYRVRYASLALRDEPTAQDNRQSALAA
LERYFFLITFASFVSESSSDFDVPFSAWLKRRNEIAKMINRMRKTGTGHFVIFAPIQDLS
AIAKGETGEVALSRAVSRGRRVGADLVGDEWAHQIIRNRSGIILRANMILKEDVWLASNT
SQTDPSSTSASTSSGSIQHIRGAINFRRVRDSFLYGLSQPTEEGIRRVLDVVKGDVKPGA
RIVWIGVREEPLCNINGTPYVLRQEAVSLRNVKSYSGISPTRLELLEDRLKADVLSELST
FEGRILVANEADDGSVNPVWEAVEGENQVKTLREVMDAVGKDECGEVFRFIRVPITAEKF
PEFSDLRDIIETVTELDMDESAIVVNDQLGRGRTTRTLVIIKLLQDWLRHNGKFVAPRSD
RPSYTVINNLLRVVRNGFEIKNAVDAAITACGEPFDLLESIENARQQAEDAEGETRDIWI
ARGLRELRAYFFLIIFTTFLHESRPETWRDLGRTASYEDFVRSRPVFRTIEKELDHAGID
ALVPLKRPIASGTASTDEVADFVAKRNGRILSAYTLCKADYFSGLQKMSLPERVEGAPNF
RRVPLTLAGSDAVRTPHPTSSNGGPNVAGATLTGSSPQAGPCVYGSGMPTVDGLRRALEK
MDGKGTQILWSSLREEPVAYVAGKPYVLRLFDQPLENVVTTGVTTATVEAMEAELKKDLL
REREQTGGKVLLHDEIEENGSFTVTAMWEDVKAEDILTPREVFKIMQDEGFQVDYDRLPV
TDEQAPIPGIFSRIEQRVTGALSGRDKEKVGCAWNCQMGRGRTTTGMVACALVYRILFNR
QSTFDMSASFIEPPEHGSFWDGREAEPLLNGEYKIVLQLVGVLKNGKLAKRLTDRAIDDM
EAVQNLRTAIYSFKLRVEAAEDGSKKRSKLFDQALNYLYRYATLIVFANFLLDKASHLDD
TDDEDEATVSFPSFEEYLRERSEIKKILNRRTLD