Protein Info for mRNA_3021 in Rhodosporidium toruloides IFO0880

Name: 11389
Annotation: K00697 otsA trehalose 6-phosphate synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 576 PF00982: Glyco_transf_20" amino acids 32 to 187 (156 residues), 145.1 bits, see alignment E=1.5e-46 amino acids 235 to 541 (307 residues), 479.6 bits, see alignment E=5.4e-148

Best Hits

Predicted SEED Role

"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] (EC 2.4.1.15)" in subsystem Trehalose Biosynthesis (EC 2.4.1.15)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.15

Use Curated BLAST to search for 2.4.1.15

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (576 amino acids)

>mRNA_3021 K00697 otsA trehalose 6-phosphate synthase (Rhodosporidium toruloides IFO0880)
MADNDSTGATRLARQRSTSSEIHQSRLSSSGQLIVVANRLPVTITADKDAPGGYRFSVSS
GGLASALAGAKKKMDFVWIGWPGFDVPEIDREFITKKLQTDFSCIPVYLSAEVAERFYNG
FSNSILWPFFHYHPGEIQFDETDWLAYRQANLLFAEAVQREVNSGDIVWVQDYHLCLVPV
FLRDLLGRDPASMGEHGQRDVNAMFEGLTLGPQAASKPGSNNPAGINGTHGTNYVGDVQI
GYFLHTPFPSSEVFRTLPVRREILLGILNCDLIGFHTYDYARHFISSCSRLLGLKCTPNR
IELVGRHASVGTFPIGIEPSQFDESLEKEEVQQRISTLRRRFEGVKLIVGVDRLDYIKGV
PQKLHAMEVFLEEHPEWIGKVVLVQVAVPSRQDVEEYQNLRASVNELVGRINGRFGTVDW
MPIHFMHRSVPFTELTALYTVSDACLITSTRDGMNLVAYEYIACQRDNHGVLILSEFAGA
AHSLNGSLIVNPWNTAETGEAIHQALTMPADERQENHRKLYRYVSQYTASHWGTEFVAEL
QRDRAERRAIAEGKEGDESAQAAQLRRQGLQLTGKA