Protein Info for mRNA_3023 in Rhodosporidium toruloides IFO0880

Name: 11391
Annotation: K04709 LAG1 Acyl-CoA-dependent ceramide synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 transmembrane" amino acids 49 to 66 (18 residues), see Phobius details amino acids 102 to 123 (22 residues), see Phobius details amino acids 144 to 162 (19 residues), see Phobius details amino acids 197 to 216 (20 residues), see Phobius details amino acids 238 to 257 (20 residues), see Phobius details amino acids 262 to 283 (22 residues), see Phobius details amino acids 295 to 316 (22 residues), see Phobius details amino acids 357 to 379 (23 residues), see Phobius details PF08390: TRAM1" amino acids 74 to 135 (62 residues), 76.3 bits, see alignment E=1.2e-25 PF03798: TRAM_LAG1_CLN8" amino acids 140 to 377 (238 residues), 102.2 bits, see alignment E=3.4e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (415 amino acids)

>mRNA_3023 K04709 LAG1 Acyl-CoA-dependent ceramide synthase (Rhodosporidium toruloides IFO0880)
MAGRKRSNSVKEALKQLEPTSPPGATTNKPAWTQPTGPLAWFVKPKKTGQLVAVVVAIWA
AIERFAPTRQNPLTPFLFISYPLAREPGDEGQRYGKGPWDLAFLAFYIVVFSFLRQSITE
FFIRPFAMRLGLKTEGKITRFMEQAYAVVYFSASGAYGLYVMQRQESWWYRTEHFWLEYP
HWRMDGALKSYYLLQFSYWLQQMIVLVLGSVAIPLARQRSPANIPAAPRSLEKPRSDFME
LVIHHIVTLWLVGWSYMINLTMIGTAIFVSMDLPDICLAVSKCLNYLDLQRTSEVSFVFF
LVVCYMRHYLNLRILWSVWNEYDLIPEQWRSWTSPKGWWVFYGFGSGAIPAWMKYQIFAP
ILALQLVNTFWSYLIWRILFRMISGHKAADVREEGEDEEEEEQVQAVKPESKKKR