Protein Info for mRNA_3032 in Rhodosporidium toruloides IFO0880

Name: 11400
Annotation: K09489 HSPA4 heat shock 70kDa protein 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 793 PF00012: HSP70" amino acids 4 to 656 (653 residues), 522.2 bits, see alignment E=1.6e-160 PF06723: MreB_Mbl" amino acids 128 to 381 (254 residues), 48.5 bits, see alignment E=6e-17

Best Hits

KEGG orthology group: K09489, heat shock 70kDa protein 4 (inferred from 58% identity to lbc:LACBIDRAFT_189161)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (793 amino acids)

>mRNA_3032 K09489 HSPA4 heat shock 70kDa protein 4 (Rhodosporidium toruloides IFO0880)
MTSVIGFDIGQYGSKIGAARNRGIDILVNETSNRATPSLVAFGPRSRMIGEAAKTQETSN
FRNTVGSLKRLIGRTIDDPDVEVEKQFMNAEIVKVGNTVGVNVNYLGEQATFSATQLYAM
FLAKLRDTAATELKSAVNDITIAVPVWYTEAQRRAVLDAAEIAGLNCLRLINDTTATALG
YGITKTDLPTTEEPSRNVAFVDIGHSDYSVSIVSFNKGQLVVRSTAFDRHFGGRDFDLAL
VRHFAKEFETKYKIDVLSNKKATFRLSAAVEKLKKILSANPVAPLSVESIMNDIDASSTM
EREQFEELIKPLLEKATKPLEEALAASGLTKEDIETVELVGGSTRVPSLKQAIQDYFGRP
LSFTSNQDEAIARGATLACAQVSPVFKVREFTTTDAQLFPIKFVWEASADAPADEGTEIV
AFDVGNAIPSTKILSFARTEPFELEARYANPELLPGGINPFIGKYTVKGVKPAVEGGKNT
VKVKARLNLSGCLSFEGATLIEQGPEEDEATPAPMETDGAAAAPAEGAEAAPAEPPKKVR
KTTKTALPTVAAGLRLDTSIVNEFREKEGQMHASDKLVIETEDRKNALEEFVYEVRDRLE
SSWKKYSSEEDKEKLRQLASQAEDWLYSEEGEDATKSAYVERLDGLKVIADPIALRYREQ
DDRPRAAAQLRELLNEYQAKVDSGDLSHLPEDKLQKVVETVANTQAWVSNKLASQAEKMP
YEKLSITSAEMLARREAIFNELQPMVTIPKPKAKTEEAPKAEETPEVDMKDAKDVPVEGD
KPKEDDMKVDELD