Protein Info for mRNA_3034 in Rhodosporidium toruloides IFO0880

Name: 11402
Annotation: K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 771 transmembrane" amino acids 286 to 305 (20 residues), see Phobius details amino acids 325 to 343 (19 residues), see Phobius details amino acids 701 to 719 (19 residues), see Phobius details PF00616: RasGAP" amino acids 171 to 380 (210 residues), 194.3 bits, see alignment E=2.2e-61 PF03836: RasGAP_C" amino acids 559 to 693 (135 residues), 134.2 bits, see alignment E=3.7e-43

Best Hits

KEGG orthology group: None (inferred from 78% identity to uma:UM00949.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (771 amino acids)

>mRNA_3034 K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3 (Rhodosporidium toruloides IFO0880)
MSTHLSTSSSSGLVATANNRSTNRYSALQSLIADQDTDIEDELARAQKRLRDLKARISAQ
SKKNFVLERDVRYLDSRIALLIQNRMALDEREEVKEHLEDVDEGEETEMDERRQQQYSNL
FFLLQSEPRHIASLCRLVSLSEIDTLLQTVMFTLYGNQYESREEHLLLTMFQSVLAAQFE
TATEFGSLLRANTPVSRMMTTYTRRGPGQSYLKSVLAERINSLIEHKDLNLEINPLKVYE
QMLNSIEDETGDLPPDLPRNITPEVAAANADVQNIIAPRLTMLMEIANSFLLTIMNSIES
VPYGIRWICKQIRSLTKRKYPEATDYAICSLIGGFFFLRFINPAIVTPQAYMLIDSLPAS
AKHPRRTLTLIAKMLQNLANKPSYSKEAYMMSLQPFVDNNKTRMNQFLNALCEVPDFYDT
LEMDQYMALSKKDLQINITLNELYNTQSLLIQHLDTLARNDKQHLRILLEEIGPAPPQVP
RKENRTIELPLYSRWEMPIQDITTALMAENNVTQNDILYLEAKSIFVQLIRSIPRLAERR
PIQLPLVAETAATSKDATLVRKGIKVKEMLRELEELKLVDRRDNYKLLTDEVAAEIVHLG
NLREKVVLETRSLESVYKTICDHNAYLRSQLEQYKAYLQNVRQTTAGKVGTGGVGVVTVA
GKDNKPKQTQQLGPFKFTHQQFEKDGIIVETNVPENRRPSIFFLVSSPSPGAFLIALHYK
GREKAILEMDLKIDDLLEKKNQGVEQLDMEYVSLNVSKVLALLNKTFQRRK