Protein Info for mRNA_3040 in Rhodosporidium toruloides IFO0880

Name: 11408
Annotation: K17275 PLS1 plastin-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 672 PF00307: CH" amino acids 158 to 285 (128 residues), 63.9 bits, see alignment E=1.5e-21 amino acids 317 to 417 (101 residues), 65.4 bits, see alignment E=5.1e-22 amino acids 441 to 545 (105 residues), 65.9 bits, see alignment E=3.7e-22 amino acids 563 to 664 (102 residues), 59.4 bits, see alignment E=3.7e-20

Best Hits

KEGG orthology group: None (inferred from 64% identity to aor:AOR_1_1612054)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (672 amino acids)

>mRNA_3040 K17275 PLS1 plastin-1 (Rhodosporidium toruloides IFO0880)
MQALKLQRKYPNFSQEEMMALCSQFDQIDIDSTGRLPKSTVLTALSTNAQPNSPSGKYTY
DQVRETLKTVSIDSSGQVELDDFVDLVDKLRSGAGATAGQVLRGGALSGLMGAGGGAGAS
AGAGAGAGAGAAAAGGSGGKVLVKGSNTNITHSINEDERTEFTRHINSVLAGDPDIGDRL
PIPTDTFQIFDECRDGLLLAKLINDSVPDTIDERVLNKASKKAPSAMPSAKSKATLNNFQ
MTENNNLVITSAKSLGLSVVNIGATDLNEGREHLILGLIWQIIRRGLLAKIDIKIHPELY
RLLEDDETLEQFLRLPPDQILLRWFNYHLKAANWQRRVTNFSKDVSDGENYTVLLNQLKP
AECSRAPLQERDLHTRAEKVLQNADAIGCRKYLTPTSLVAGNAKLNLAFVANLFNTWPGL
EPLEENERPVIEDFDAEGEREARVFTLWLNSLDVDPGVHNLFEDLKDGLILLQAFDKIIP
GSVIWRRVAKTPQPLSRFKAVENTNYSLELAKQNHMHIVGIQGADLVDGQRTLTLGLVWQ
MMRRNILSTMASLSKGGREITDSDIVKWANEQVQKGGKRSSMRGFKDPSLRDGKFFLDLL
DSLKPGYVDYSLVYDGRTDEECKANAKLAISIARKLGSLIFIVPEDIVEVRPRLVLTFCA
ALMALQSGGGLH