Protein Info for mRNA_3044 in Rhodosporidium toruloides IFO0880

Name: 11412
Annotation: K11771 SWI1, ADR6 SWI/SNF chromatin-remodeling complex subunit SWI1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1136 PF01388: ARID" amino acids 418 to 514 (97 residues), 67.9 bits, see alignment E=1.1e-22 PF05397: Med15_fungi" amino acids 650 to 760 (111 residues), 85.1 bits, see alignment E=4.3e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1136 amino acids)

>mRNA_3044 K11771 SWI1, ADR6 SWI/SNF chromatin-remodeling complex subunit SWI1 (Rhodosporidium toruloides IFO0880)
MSYNPNQFYHPPNPALPNPQLVPQPFPTGIPPQPLQPQPQFNLAALQQQQQQQVQGPPRN
GTPQQMYPGMPGGMVHPPFMGAPQTLTPQAQPPQALPGQPQQNQVNMSAVEQLLRSGQLT
PDQFNALAQQIRSQQQQQAQRQAAAVSAAQAQAPGLPPFLAAPPPQQQPPPPQPLPPAVP
QPPPASVPDRIPFQLLQGYFAQLSQLRAMQQKTLMLQNAVQTGLVPAPGQNGGQTQITPQ
QRPMLEKQLEDSKRATGAAIHAMQAFQNQWTQQRIQADWQWYQSQRQGQPQPTQQQPRMP
QPPAPAAAPPPPQPQPPQPNNLTNMFSSPQLTAAALNNNQQLLQRQAQAQAAINAAGRST
PSQQQQQLPQQIPPPGQPQQQQPFVGQPQQQQQQAPGQQQLSGQMPPLHLLQTQLNPQLF
MKSLFEVMRTRGEPIETTPFVDGKEVDLYQLYQAVMVAGGSQAVHQQGAWHRIAAQLGWP
VDASANALRDAPPETQRISLELARTYSQLLRPFEEIWAKSLVKQQQQIIEAQRKGQQQLA
QNVQQLPNPQQAPPPQQRPPSQNAVRPPSQNAVRPPSVQPTTPNLGATQLEASRNQLLQQ
AKAASLAAQQLQASAPALAAKQQQANTSSPSIPQQQVPKGGMEPGAEQMEQAKQFVGMLN
AQIEAQRPKLKSVEIAEDQRQSVTAMTNELVPHVRRVVETLPLFYAMTGDQVSTRKMLTF
AAIFQDQIRYMATSQFALDVTGLTQLRDQFQRCWQFMRQHATSKGNGAQQQQATASSPPI
KPEQFSTAAQKSGIRVEDLKPPPAKHRRTASSATAGSPSGIPSPQTPQTNAASPPQAGAT
PAAAPKKRSRAKKDAAATIAGSSPAAAPAGSPAATLAALRSDLIKDSPSPRGIVVPAPPP
PVVEESPLLKRKREEEEIERDPDAYIEKTLKTLGSAAPSFASFLLPGISNGVAPGLALSV
DPAIPPIVNDPTVPPLSFAVLSSSNNLPPMSTSLKDSSLTVNAEPFDFDLYINSSAAGFD
DDIDAPTPDLIGGAGAVSAATPATPADAIAATPQHVPASLVKSPKKQASGSSPSSSSSGP
SAPTDDAFYTANGVIVDDLDQWLKGGAPGASNGFSSWEAPENALDGGSSWNFYSVF