Protein Info for mRNA_3062 in Rhodosporidium toruloides IFO0880

Name: 11430
Annotation: SUPERFAMILY--SSF49899

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details transmembrane" amino acids 375 to 396 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 47% identity to cne:CNJ03040)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (397 amino acids)

>mRNA_3062 SUPERFAMILY--SSF49899 (Rhodosporidium toruloides IFO0880)
MPANHPSGRTQRHRTSPIAPSTLAAFAALLASARLPRADAAYTPLKTYSGSSFFDGWDFY
GHYDNLTNGDIDFVNRTDSSDLAYINSAGNAIIKMDNTSTVLYPNKRRSVRVQSQDTYPI
GSLWVFDFVHVPYGCSVWPAAWSQATVWPEGGEIDTFEGVNLVQNNQYALHTTSGCTNSN
SSSSNFTGTLTYGNCDTSANSNSGCTILDPRTSSYGAAFASNGGGVYATEFSKNGISIWF
FPRANVPSDLSSNSSAPDPTGWGEPVARYGGSSCDVPTFFAPQHLVIDITACGDWAGHVT
NTTGCPLTTDLCYTSFVLNSSNYNTAYFEIPSIRVYSNADLAANSSASATATNTSTSAST
SGSSAPKSAAGRMRVGGSLLGAVVAGMGVLVGGWALL