Protein Info for mRNA_3090 in Rhodosporidium toruloides IFO0880

Name: 11458
Annotation: K03062 PSMC1, RPT2 26S proteasome regulatory subunit T2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 535 TIGR01242: 26S proteasome subunit P45 family" amino acids 49 to 406 (358 residues), 471 bits, see alignment E=1.4e-145 PF16450: Prot_ATP_ID_OB" amino acids 88 to 142 (55 residues), 44.5 bits, see alignment 2.4e-15 PF00004: AAA" amino acids 201 to 334 (134 residues), 138.9 bits, see alignment E=2.9e-44 PF07724: AAA_2" amino acids 202 to 294 (93 residues), 23.2 bits, see alignment E=1.3e-08 PF17862: AAA_lid_3" amino acids 356 to 399 (44 residues), 38.4 bits, see alignment 1.7e-13

Best Hits

Predicted SEED Role

"proteasome regulatory subunit Rpt2" in subsystem Proteasome eukaryotic

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (535 amino acids)

>mRNA_3090 K03062 PSMC1, RPT2 26S proteasome regulatory subunit T2 (Rhodosporidium toruloides IFO0880)
QKKWEPPLPTRVGKKKKSGPNPAQKLPAVYPTTRCKLKLLKLERINDHLKMEEEFVENQE
RLKPTLTEDKSVEERTRVDDLRGSPMSVGTLEEIIDDDHALVSSATGPEYYVSIMSFVDK
DQLEPGCSVLLHHKTHAIVGVLADDTDPMVNMMKVDKAPTESYADIGGLEQQIQEIKESV
ELPLTHPELYEEMGIKPPKGVILYGVPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG
DGPKLVRELFKVASENAPSIVFIDEIDAVGTKRYDSTSGGEREIQRTMLELLNQLDGFDD
RGDIKVIMATNKIESLDPALIRPGRIDRKIEFPLPDIKTKRYIFKIHTSRMNLADDVDLE
EFVHAKDELSGADIKAVCTEAGLLALRERRMRVTMADLRSAREKTMFAKKDNGPEGLCAS
ASFASDLYSLADLEFLVPRRPVISLCTARYACTAVILARTARGARRKLEHCGPDSIIQTN
SLVKVMQVPAAFPLVAMNRPRKQPLTSRLPHTLAESARRLDVAAQHGTVRQPYDA