Protein Info for mRNA_3092 in Rhodosporidium toruloides IFO0880

Name: 11460
Annotation: KOG4784 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1144 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF09814: HECT_2" amino acids 746 to 1137 (392 residues), 145.5 bits, see alignment E=1.1e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1144 amino acids)

>mRNA_3092 KOG4784 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MATLQRPLAATPLAHAPESTAPAQAFDPTAVPRPPAGLAATADRDALGDEREEEGDLIDL
GQERLFTGSRTRRDKVEEGASDEANGARQAQGGTGTLSERTERSQELLGSLGAARHAFLF
ALNGLVQECLGGASSAQQSPRPDQATSSNDAPPGFDSTLRRHSLAVPTPSQMASQQPDIL
LTTVLDTLRAHDPTTSSASPVMLSVERASPLLGSRRQMTTPNSALIQELQTRVEAAANDS
LPPTEAELAPTLASLLSCIERLSSITQSSDTYTRPTSSASPSRPPSMAFVDGSTPSAVYE
ALEQEAAALSESSRDQQLPHGVVGAAREVEQAERDLLWGRVFDLSERVKLLSRQRVEALE
RDGAEDWMRTPQDASQDTKFRADSLYEESLSDLPRYSHDLDSTQQNSHLPPAYYHDFVTD
DKKGILAVDGGDGVTDLRRSSTSAPRTRQRKVSGAHNEKMQRDFENVTSAIERLYLVSPQ
LANQRVEPDRRALRERQLAKLGNAIERLSQGRLENQRAVPSPAMDEDGQESTPQSRATSR
RAREQRAFDRLLDQIDKAASRTLADQRVELSGKRREILNLDTAKNDFEPLSDKYEARRRE
YILSHTGKGRLASQDAILRPSGVVAPFPRPAPELEESVTFGEFLEEEYGFNRPRSHSLPT
NALEREKPEAVGEKGSLRVGLLKKGQGGIGLGMLDTGVTSSTAADYEVLDVPQVDWIAEE
SRNLGTLVVTFWPRSSHKSDSAAFEVVAVESSAILVAVKGQKTASRVALPCRVVPQQATV
QLVGSVCEVKLVTLGSTSPTKSRSDLEIHSPLSTDELRATSPTSFRCATCDAELANTSTV
SRWNALPSEYWAELLDAWMCHQDQKLSDDLIAKGKGIKPRPDEVLVATSYVLLPRELTSN
WTAPEQAETESIDPLPKQLSCSRSRCEGYIGRDTDTFFLPQPAKANNGDYLHAAHCVSCD
ALVGSHVLPADGNTSESTTVRLLKYATYPASSDTARPAPPRHTLSTYLTADMLETGQAHA
CHRFILEDAQTEQAKLLLWFFNPSIRLSFSSSTADANSLLSPSDSSASPSLVSRSMNSVK
VFYAVVQNDNTAVCGTFVSAKHERIPYPLSVIQRLTSLLQASTLVYPFAKRKFGELDIGF
LERL