Protein Info for mRNA_3110 in Rhodosporidium toruloides IFO0880

Name: 11478
Annotation: K14558 PWP2, UTP1 periodic tryptophan protein 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 907 PF00400: WD40" amino acids 106 to 137 (32 residues), 13.1 bits, see alignment (E = 3.8e-05) amino acids 153 to 187 (35 residues), 20.7 bits, see alignment (E = 1.5e-07) amino acids 365 to 396 (32 residues), 28.1 bits, see alignment (E = 6.9e-10) amino acids 402 to 437 (36 residues), 16.3 bits, see alignment (E = 3.7e-06) amino acids 488 to 525 (38 residues), 32.7 bits, see alignment (E = 2.4e-11) PF04003: Utp12" amino acids 770 to 874 (105 residues), 88.5 bits, see alignment E=9.3e-29

Best Hits

KEGG orthology group: K14558, periodic tryptophan protein 2 (inferred from 65% identity to cne:CNG04380)

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (907 amino acids)

>mRNA_3110 K14558 PWP2, UTP1 periodic tryptophan protein 2 (Rhodosporidium toruloides IFO0880)
MALASTSAQPLYKTPAASSFRFSNLCGTVYRQGNVVFTPDGNSVISPVGNRVSVFDLVNN
KSRTLAFENRKNIARLALSPDSSVLISVDEDGRAVLVNFKRSTVLHHFNFKKAVRDIKFS
PDGKFIAVTHGSQVQVWQTPSHLAREFAPFNLHRTYTGHYDDVLSITWSADSRFFLTTSK
DMTARLYTLYPVEGYRPKTFAGHRDAVLAAYFSEDHKTIYTVSRDGAVFTWSKKADEEAD
SDEEDEEMALGLAPQASTSTGPDNTIALTRWGVQQRHYFMQAGAKVVSTTWHAPSNLLIV
GFSTGVFGLWEMPSFTNVHTLSVSQEKITSVAVNASGEWLAFGASKLGQLLVWEWQSESY
VLKQQGHYFDMNTLSFSADGQQVATGGDDGKVKIWNATSGFCFVTFEDHSSAVTAVEFAK
QGQVVFSASLDGTVRAFDLIRYRNFRTFTTPSPVQFNSLAVDPSGEIVCAGGAGDGFEIY
MWSTQTGKLIDILAGHEGPVSALAFSPLGDRLVSASWDKSIRVWDTYGRSSTVEPFQLKA
DALALAFRPDGKEVAVSTLDGQISFWDVKNGVQRTLIEGRKDVSGGRKADDRVTAANNSS
GKSFNSLSYTADGSCVLAGGNSKHVCLYDARDGVLLRRFQISQNLSLDGTQEFLDSRKLT
EAGPMELIDDRGDLSDLEDRLDKTLPGARSGDMSKRKYRPEARTKCVRFSPTGRSWAAAS
TEGLLVYSLDDSITFDPFELDVDITPASILETLNEERHYLKALVMSLRLNERPLIQTVYE
AIPPSAVPLLTRQLPVTYLDPVLRFLATQLEKSPHVEFHLVWISSLFAAHGKHLRQYSSQ
HAATFRGLQKGLTDVQESIVRLSDDNSFTLQFVLDQQQRRKESDEKMEAEADGVDGFGST
RRMEIEL