Protein Info for mRNA_3155 in Rhodosporidium toruloides IFO0880

Name: 11523
Annotation: HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1197 PF08550: DUF1752" amino acids 152 to 179 (28 residues), 42.9 bits, see alignment (E = 1.7e-15)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1197 amino acids)

>mRNA_3155 HMMPfam-Fungal protein of unknown function (DUF1752)-PF08550 (Rhodosporidium toruloides IFO0880)
MAAVLSSPTPSFPSSSKPLVTPPLLGSPELSPDHQHERDGHSHPTHPPTASADTSNNARR
SNSVPISSSPSSSSSASGGPSEPSTPTSSISSGSGASHSSSLVPAYPYNVAMAPAAFSGG
PLPDDMDVTTRLPSICVDYLSHDWAEDDVWTSWKAMTRHKSEIANGVRLENASWRTWAKQ
RGKLKTVSPETLNWLKDSDVTWLYGPLHTAVDAVPPPKVATANDRLGLESLRPLDASKSP
SPSKKAEKKEDGRGSPVAATPTATKAPPSPTPTRAPTAATGARLSRNASEGGGTRARKLA
KELKTKPILKYRSLSDILMPQAQPTSPDVEQLSMDFEDQSTISVHHARSDSHLVRLNSLN
RRTKRSSPVHSPGSSSPERSAASDSSSASNFLLRAQRKKDRRHISFNHRVEQCIAIDSSE
DARTYSTQTSSDSEDDDDDDDVLTFGARSPRQHPFARPPAPKVPHTIARLGPTTLKSVEL
YPAPSPAVVFSSDPTEYDEGAASPPGSGGSFGQEHVETAPYGAAAGGRAPGPDDQARQQQ
QAAGRRVMYDYSSPGSAMRSQWDAEDEDDYAMGFDYFTGAAGAGPDVGIGDEYDMAQYGS
THLIGGSHNNYRGGTVSESSSYLGGGPYSPNSPYHPGSGTLDPQYHATTSSIPHYRDTLP
SSSSSQSPSSSATTSTTTSPSSSSVQVASVSQRGPYNPAPTSRESNPPRRSALKGGRSRE
ASVDSTASSASTSPSNASAPSPPLAASSPPVGIQAVATAIPAHVRPSIGRHSASFEENER
GRSASRGSSSSLEREGSSRRGSSSISPTSYSPPNASYATAAAAARSGGSSAGAAGGAAPI
AIQPSWMVGSYDSLSSVMNSRGAYGLPDVPESASESPTYPVRDTGAGNLSPPPASSGVAA
GLGRIVTSSSVDSMGSLGSFGAGPVTPTSPTFGTTSPARRYQSLGAATDDEDDDARVEDI
DAVPATVDDSAEVKKTDFERRTDQKDEAKGRTADRPSPIVVPPKASVPPAPVSPPIVTSP
ASPSPPPPSASTSTGLGHQRTSSGPRLRNPSPSTATTTAVAEQSAGSDSIGSGSSSGATS
TPTESDSSGGGNGMLKRSPSSSSLSYARQSLLRAARASSDRDDSASRSSMEGSLRRASSD
SSRVPQADHDYQYGADDDELNGVAGGVGAGINVAGTARDLLGAISKGIWGSLGRSNR