Protein Info for mRNA_3159 in Rhodosporidium toruloides IFO0880
Name: 11527
Annotation: K15437 AIMP1, ARC1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Methionyl-tRNA synthetase (EC 6.1.1.10)" (EC 6.1.1.10)
MetaCyc Pathways
- tRNA charging (21/21 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 6.1.1.10
Use Curated BLAST to search for 6.1.1.10
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (432 amino acids)
>mRNA_3159 K15437 AIMP1, ARC1 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 (Rhodosporidium toruloides IFO0880) MAPSLTLSSSKPAGRAATLINEVYGQYVPDLTVQQGDKVSLSTGSSEVTSLADVASQLFE AAGKTNDALGASEEQRTQAKSWLKKVEELDVEKPEELEAVDAELTSKTYVAGETFTAGDL GVFAAVHPYMAQASHSTLLSHPALTRHFDHIQHLPLVSTALARSSTFSPSVVSIDVNNVP VVEIKPDAKVKKPKAGEAAPAAEVKQAPVEKIKSDKVKGEQKAKAAAAPGEGEKKPKGEK KEKAPKEKKPAAPAPVAEAPAPWMIDLRVGKIVDVKVHPDADSLYVEQIDVGEAEPRTVV SGLVKYKTLDEMRNATLITVCNLKPASMRGVKSFAMVLCATSPDGKDGGVEFVNPPAGSQ PGDRVYFEGFADKQPLDLLNPKKKIFETVQPGFTTLENKDAAWVDKESGKVYKIVTDKGV CAAPNFVGASLS