Protein Info for mRNA_3178 in Rhodosporidium toruloides IFO0880

Name: 11546
Annotation: KOG4561 Uncharacterized conserved protein, contains TBC domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 transmembrane" amino acids 30 to 49 (20 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 115 to 133 (19 residues), see Phobius details amino acids 141 to 163 (23 residues), see Phobius details amino acids 169 to 185 (17 residues), see Phobius details amino acids 197 to 218 (22 residues), see Phobius details amino acids 247 to 266 (20 residues), see Phobius details PF03798: TRAM_LAG1_CLN8" amino acids 73 to 270 (198 residues), 98.8 bits, see alignment E=1.8e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (311 amino acids)

>mRNA_3178 KOG4561 Uncharacterized conserved protein, contains TBC domain (Rhodosporidium toruloides IFO0880)
MSWIESPLLTPPANWVTLIQPIANALSLTALPPVAHLVLLSLAASFAARRVSAVLSPRVF
GRYYPTERRKRDDWDLHMVGWLYALVATPIAIHLLRHPSPELDLDPLYGVALPEQRLSAI
AIGYFIWDALVTFRHIQTQGLGFFLHGATCLVAFTFTLRPFVLWCGPRFLIWELSTIFLN
AHWLLDKLHLTGSPLQMLNGLFLVSTYICARLVFGTYTSWQFWKLMVPGAGDANTLLAEK
VRDAGWVRWLYLVLNLLANGLNFYWFRLMILALKKRFVPSPTTSASKLAQRKPVPVDGHL
GEAQERRVKGE