Protein Info for mRNA_3198 in Rhodosporidium toruloides IFO0880

Name: 11566
Annotation: K20176 SGSM3, MAP small G protein signaling modulator 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1312 transmembrane" amino acids 1216 to 1236 (21 residues), see Phobius details PF00566: RabGAP-TBC" amino acids 1039 to 1244 (206 residues), 182.9 bits, see alignment E=3.6e-58

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1312 amino acids)

>mRNA_3198 K20176 SGSM3, MAP small G protein signaling modulator 3 (Rhodosporidium toruloides IFO0880)
MIPSSHAHPLSPPVETASSSSPFFASPPSQKSDLFVPPTSQTDALFPASPNAEEDVGRRG
SVATLMARSSSAQGIGLGLRDSSVSRRSEKSATRSRASSSPPQPETAASSPILDKLPRHL
AFPSAPHRLPTAAFDALPLSHLVALVQALSQRLEEAQTVLREEREELKALEKLARDKGAG
EGEIERVKVRARTEAKEAAAVTEGKEEGEWRIDLPHEGEGEEAEDAREGAALKTEVDLDL
EDLTEAISSNAFDLGLGPTAADTSPDGDAPARSRASSMPPPFSPPEQADKSDTASIASTP
VPSTPSDASATPQSASTFKPVRQRHASLSARFVGYIAGGSGSNGSTPSTPAPNATITPAS
PSSATFDPTSSAHSPAKKRSGRSGSIRSVSSTASNERKSYGDWLGWRGWGKSGGAAESIK
EGQSDAEDEDEVADARDVAAGGQILDDASVASEPRQEVISVAEHPSGPDSLSSSPRPSLA
DRATLASTTTDSLPSSPPTSSRSTALSPGRRSSRSSIAPNSPTSTRKRSLAPPPSLQPAS
QQATAAAVLSTPLTTSTISAPSLASPSRGAGSSPSSPARSPSPRSLALPETDLSTRSADD
EGEATIKARPVAQGGTSGPSFVPGVPLYSAPPGSAAKAAASDHGYVAAAKGPISRALGLG
PGAPAGISRTNSSSTTSTEPNTTIFPRLPSLSLSRYSPFAQPALSTPATHVSLSASTSLG
AAGSSHSSPLIAYTATLAPSNSRSGAQTMELDTISGEAAPPSLALLKPSASAGPGAEGDD
GDGPMIDRYGFIYDVRTGMELLKESRRRKEGDKAVDKPSEKAKKLKKKGSKGVEAEAVPA
VVTTPQTELEVHPQLDALREAIGLTPTTEEENAFSPPPSTPQTEVTPAPPSDAASRPAKL
VRAPSSSAGDSRATSPNGTGPQSMRALLAQLRTITDAVEKTQQDAWDAFIRKRQKKLAKL
KHAEAEDDGEKDAAHRRERPKSTVLLADQDMSSENGLAEQAWTSENLVGVAQMGTEKKGK
KEDWNAFKQLVRKGIPIVYRPKIWGECSSANEAREPGVYQELLAQPTTDAEAQCLKQIDM
DCHRTFPTCVFFAGNGPGVDKLRNVLVAYSRRNPKIGYCQGMNNLAATLLLTHPTEEDAF
WVLVCIIENILPSDYYTSHLLVSRADQQVLGDLVERIMPKFAAHLDEHGVELSAITFGWF
LSLFTDCLPIQTLLRVWDLFFIHGTIFLFRVALAILKLHEAELLARDSAASLYALLGHLP
AGLWNADRLLKVACDDLASVVKDRDVSLLRNKHVLALEEELGLSATDDTPAS