Protein Info for mRNA_3206 in Rhodosporidium toruloides IFO0880

Name: 11574
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1316 transmembrane" amino acids 787 to 810 (24 residues), see Phobius details amino acids 918 to 934 (17 residues), see Phobius details PF00172: Zn_clus" amino acids 74 to 117 (44 residues), 21.7 bits, see alignment (E = 1.8e-08) PF04082: Fungal_trans" amino acids 549 to 740 (192 residues), 118.4 bits, see alignment E=3e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1316 amino acids)

>mRNA_3206 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MSDSDDGGYSSQSDTDNPQTLNPLDLATSASASSSTQNQAGQPTKAKGKGRGGQGGAGGK
ADDKEVRKRSSKACTCRKSKCKCTRILDPATNEPVGPCQNCLTVGAECTFLGASRKRYIE
AIESRLYRMEALLGGLLGSDDPRAQTLLGELIGDNEARTILARDLKAAASAPDSKAPRRS
WKREFADSQAAAAAAAAMGVPGASGTGMDGQPLISTGFPLQPGQPAFTASPGTLGMGGGA
GGMGMGNWLSEEDLNNLGAAAGGETDLFGSAGGANNALGFDPTAFGGGNGGATFGSYRGP
GGESSEDGASPGFSALAGGTGLSIPVAGSPMSTSLPTGTTTGDLSTSPRQRRRIEGPPNF
AGSPTSPYPSGPSSAPSERKQMAYAFTLPPVGAAPPKHSQSSAMTQGNVLSPASIGHTGT
STYSISNATGAHGGAGPSGQGKEQGGRAGSQGEGNVHQSPAEPLTELADVIGQLSLNENA
EVRYHGRSSGLYLISKSQRFRDFYWQFPSAGVWPPADGRVLKTEREILQLTDTEDPLPDM
QTQTHLLAAYWTYVHPHFPLLYKVSFMRQYRHSLAHPDSTEPSTAAGTGKVPMVLLLSMF
ALAARYCDLEEARKDGKYWTAGQEYLEKARRILNYDYGSSRLVTVQALLLISYREIGVGA
MSSAWMTCGMAIRMAQDLGLFRDVEKWFLPIQRFSHEEKQTRKRIWWACVILDRYTSSYI
GRPGTIHERDYDCGFPSEDEPDEHEQWRPIRVDGTEWNSPPRSGSEEVPDEVAKFLKSYP
PTRAHTLSCFNAAGALAVIINRIIINIYAIRIRVLGQSSETLLSLLDQSLASWYLALPPH
LQYNPASKKVPPPHILSLHLQFYSSLILLHRPFIPGQNSTQSPGNFPSHSICTTSAHAIA
NIVTTWRKTFTLRQCPPFLTYPIFSAAIICVYNASFDEALAGPAKIHLLQCMNALKEMEL
IWGSAIRQWELLHGLVDLRDAELGAELAGLNSQGGDASRGTKRPTMDVDEPLPSAPNSAA
FNDLRPTNFHNRPMGGRSGSKPSATRRHSSSGSRARPPAPSSGAGGPRVGVTSPSIPENQ
PLFPAPAALQSPPLGNFPVPMPPSLGGNASTFPNMQQQHSQLPPFAQQAPPMSMGAEGMA
QTMDILNPQIDLSQFRSRPGSSSGPTNFSDLLNSFLTPTEAASTSGVNPFAFNQFSQNAQ
PGPGMPINMTSPGGQSGPSALDPTMAFFGMPLGANLGDDWFNYSYNAFASTSDQGGTPES
QGAAGATPGSSSSIPGSAPAPAPPQRTAGVPTLSQPVPPLPQPPQQQQQSPNRPTS