Protein Info for mRNA_3243 in Rhodosporidium toruloides IFO0880

Name: 11611
Annotation: K10752 RBBP4, HAT2, CAF1, MIS16 histone-binding protein RBBP4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 PF12265: CAF1C_H4-bd" amino acids 17 to 86 (70 residues), 98.3 bits, see alignment E=3.6e-32 PF00400: WD40" amino acids 218 to 256 (39 residues), 16 bits, see alignment 2.7e-06 amino acids 268 to 303 (36 residues), 19.8 bits, see alignment 1.8e-07 amino acids 311 to 347 (37 residues), 21.1 bits, see alignment 6.6e-08 amino acids 370 to 403 (34 residues), 17.5 bits, see alignment 9.2e-07

Best Hits

Swiss-Prot: 63% identical to HAT2_USTMA: Histone acetyltransferase type B subunit 2 (HAT2) from Ustilago maydis (strain 521 / FGSC 9021)

KEGG orthology group: K10752, histone-binding protein RBBP4 (inferred from 63% identity to uma:UM04760.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (422 amino acids)

>mRNA_3243 K10752 RBBP4, HAT2, CAF1, MIS16 histone-binding protein RBBP4 (Rhodosporidium toruloides IFO0880)
MATEADETSTLYKSINEEYKIWKKNSPFLYDLVITHALDWPSLTCQWLPDKETPADKDYT
VHRLLLATHTSGEDNNYLQIATVHLPKPQAELSLDKYDDERGEIGAHTATEPRVQITQSI
NHTGEVNRARYMPQNPDLIATKTVMGDVYVFDRTKHPSQPIGNECKPNITLRGHSKEGYG
LSWNPLKSREGHVLSASEDTTVCHWDIRGYTKGNSSMDPLNVYRGHTAIVEDVAWHNLQE
DVFASVGDDRMLLLWDTRGQQGAMKPTARVQAHEAEVNAVAFAPHNENILITGSADKTVA
LWDLRNLKLKLHTFESHQEEVLQLAWSPTNETIFASASGDRRINLWDVSKIGLEQTPEDA
EDGPPELMFVHGGHTARPTDLAWSPNEPWTLCSAAEDNVLQIWTPSSTLANAEPVVEEIE
LE