Protein Info for mRNA_3266 in Rhodosporidium toruloides IFO0880

Name: 11634
Annotation: K14763 NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 signal peptide" amino acids 1 to 87 (87 residues), see Phobius details PF04410: Gar1" amino acids 159 to 275 (117 residues), 116.7 bits, see alignment E=4.3e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (329 amino acids)

>mRNA_3266 K14763 NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 (Rhodosporidium toruloides IFO0880)
MTRSRWKARRSSGDGKSCCRLRRRCGRRACRGEQRYRKKMLLQGRKNRRTSAAMSRSRRR
IRWQTSAYLWLVWLHLTQLILSRSLSSDSSDSDSDSSSSESDSTTGAPQGGRRNRRNRQR
AASVASDIDDDESGIVSSKTAPKTEHEVVEPDVAPPAVQKLDENAEIAKFGKVESVIENV
VVVKAETGGDWRVLDEGTVVCWEDKTVIGTIFETFGSVQQPFYSIRFPSSAPPDRTVFTI
SRPVFYSPNLASFVFTRDLRHIKGSDASNIWDEERISSRATSRLLRRHRRRAFVRDDSFA
SSYRSDGSATTSSHGRREAAAWASGSTNV