Protein Info for mRNA_3274 in Rhodosporidium toruloides IFO0880

Name: 11642
Annotation: K00108 betA, CHDH choline dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 715 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 698 to 714 (17 residues), see Phobius details PF00732: GMC_oxred_N" amino acids 52 to 364 (313 residues), 199.3 bits, see alignment E=1.4e-62 PF05199: GMC_oxred_C" amino acids 501 to 638 (138 residues), 108.7 bits, see alignment E=5.9e-35

Best Hits

Predicted SEED Role

"Choline dehydrogenase (EC 1.1.99.1)" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis (EC 1.1.99.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.1.99.1

Use Curated BLAST to search for 1.1.99.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (715 amino acids)

>mRNA_3274 K00108 betA, CHDH choline dehydrogenase (Rhodosporidium toruloides IFO0880)
MVAPTTLHLAALAATALSLLPSSALARLDRRALQLNRRANTTDAAVLNGQTFDYVVVGGG
TTGLALASRLSQNSTLKIAVIEAGSTGDEVEDKVLAPAMAYFGGIANQESPYDWQYSTTN
QSELGGRSVFWPRGKILGGSSAVNGLYMIRQSAIEQDSWGSLVGDPDGWGWDTMYPYLKK
SETWTPPSDYYVSSAHMVLNESLHGLDGPVHYSYPGIFYNSTFEWIPTLENMGLDSRDPA
GGENWGAFIATSAINPTNWTRSYAKNGYLDPVNYRQNLVVLTGYQATRIVFDGTTATGVE
FAASATGQTYTVNASKEVILSTGVIGTPQLLQLSGVGPTDLLSSLQINVVKDLPGVGMHL
TDHLSGAITLNTSFPFSGDPVESNTTFAAEQLALWKAGDANSLYTSPNDAVAYVNLTTLM
GGAQQANEFMQQIKANQSDLVQAYSSDKAIQAGYNASYLAELRDIYPSAVGMAEILLSNT
GTYGGYGDAVTVQIQAAIQHPLSRGTVKINSTSVFDKPLIDAGYLTHPADIQILRQAFKF
ARNVSQTAPFSDYVLNELSPGSAVQTDEEWETWIRGVVSTEYHPAGTASMLPESEGGVVD
NALRVYGLTGLRVIDFSIVPMSFSAHATAPAYGLAERAYDLLLSTPKVAGGSEASTSANG
SSSAAVTGVPGAASKTASAANNAAETGKANSAPTGNAKVGAAALVGLVGALALLA