Protein Info for mRNA_3298 in Rhodosporidium toruloides IFO0880

Name: 11666
Annotation: Hypothetical Protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1133 transmembrane" amino acids 302 to 324 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1133 amino acids)

>mRNA_3298 Hypothetical Protein (Rhodosporidium toruloides IFO0880)
MAEHPQLAHDSPTSHSGPSHATRGEEEAREWEARRVEQGASEATQGASKGRRIDKKVVTD
LVHHLFSPHTAGDVPASTVALVSPHLSISFPFLPAPAPSFHSRPKGDDAEQTAISSLSQK
ALDLFRFPAHAVNVLPLASWTPRVYNVEETTLAVASPEHAKGKGKAKEEEHLEIVEKWSA
EVEWVMEIGSLRGASVTDEAPGPSSRTGLMTRSMPRKVELVFTSRQPPPTPPSEVVQSAA
LAADVGAFDVPHSITSEVSPTTPTDLIEAAGEEEHNLALTHVRYLFPQPLTLPIVPSYFQ
DVALSLVFACVGWLVPFAFFLLKAFGFADLASVTTKAPSRQDLTLIKWLEYEHGRRGTAK
AVAQPAETSASTSSQLFERPSRRSSIASQSPSLERSTNPVVHSALRRSEHVLRRRASTVP
STSTSTSSATLLGSPEEHHHVHFAAQTLPPSTLFTKIVDIVQSLLLHVRQTLDDITAVAW
TVRQTVVLVTEFLGSLFSVGKGVLQGEDGEEEAQTHGVKRRRSSVQHHEGRGRSRDVGAE
KRTKHHEGEDVGDVAEEEEEQEDPKPMPTSYPMVRSPDLSRGGGFSVEKHVAFAGKRSAS
APPTPLLPQVPFTRPSLPRRASANEPEGEAYIPPTDPAHHDLPSIATADNPLARLHTEVS
REAASRGRSLSPVFAEEYSHHGVPERAYSAEGKERAEAAKEAAEVGRELMGSPDELKALE
GVELQLEEKREKRLAEMQQEVEVEKAAAEGAGGGSGSQFYGLAAAQSVSADPYFASLTRM
LPPAPHGLAPPPMHGPTDTASSTPPVLSPFSSLAQSAPSTSSAAPGTVALSLAQKLHALA
PGQRRTKEEAIDTPVEPQTPDEAFDEGHKPAPASSGRRKSRDYGFEMSEAMAPPGLRQPK
VEEVPEEPAATAEKPSRVTYCSLAEARAQAQEGEGEAEELEATSGGKVVTSEEEGTTTPR
AAILGSPKTPPTALATKEPHSAPTAFTPPDSPTASTFPSASVAPPTEAQTSRLIRSHSHP
SDTDLKHYYSPSSTLLSGEGALGSAEGPPSVEGVKAGTLLSEEAAPKQDDPPSIVRGEEA
GEELEEERAEKIPLRHPLPGGSTTAAATDEGGQGGGAGGKKKRKTKGKKSGKK