Protein Info for mRNA_3303 in Rhodosporidium toruloides IFO0880

Name: 11671
Annotation: K03249 EIF3F translation initiation factor 3 subunit F

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF01398: JAB" amino acids 20 to 124 (105 residues), 63.5 bits, see alignment E=1.9e-21 PF13012: MitMem_reg" amino acids 177 to 319 (143 residues), 52 bits, see alignment E=9.1e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (324 amino acids)

>mRNA_3303 K03249 EIF3F translation initiation factor 3 subunit F (Rhodosporidium toruloides IFO0880)
MSSLTLALPASSLPTAHRPVQRVHAHPAVLASVLDAHLRRNTQQDRVFGTLLGVRDVQSG
TVELRNAFGVPYEVRGKGQVTIDMDHHRAMLDLHLKVNPREVVVGWYATSPQLNSFSALI
HNFYTSESAPHPAIHLTLDPSSLSFAAYTASPLGLRAQDAHLAFTPVSTSLRVPEQERPG
LDLLTSNLSSLSALAPAPANPETPQTPLQTLQTLLATVSQMLDQVLAYVADVVSGAREGD
EKVGRALYETVGHVPRRAPAAVAATEDDEEKAAGQKDKKTGAAAARRDFEEEFNAHLADV
LMVSYLANVIKTQAELSSRLNLVI