Protein Info for mRNA_3324 in Rhodosporidium toruloides IFO0880

Name: 11692
Annotation: HMMPfam-RTA1 like protein-PF04479

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 transmembrane" amino acids 32 to 55 (24 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 94 to 119 (26 residues), see Phobius details amino acids 138 to 160 (23 residues), see Phobius details amino acids 179 to 204 (26 residues), see Phobius details amino acids 216 to 234 (19 residues), see Phobius details amino acids 254 to 278 (25 residues), see Phobius details PF04479: RTA1" amino acids 70 to 279 (210 residues), 167.7 bits, see alignment E=1.4e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (323 amino acids)

>mRNA_3324 HMMPfam-RTA1 like protein-PF04479 (Rhodosporidium toruloides IFO0880)
MSSTGQCIALAHGSKEAIQACLDNRPPTALYGYIPSISLGAIFMVIFGISGFAHLAQLLY
SRRSWWMGFFVAGNILEILGWAGRLAAHYAPLNFSLYVMQICTLIIAPAFMSASLYWAGG
IVVSHLDPSKSWLSGKWFKVVFMIADLISLVIQTIGGGLAGSAAGSKPKPKQLRMGSDIM
LAGIIVQLAVMVFYVAYMVTWAYLARQSVKRAGGRMQLMLAALFASSLGIIVRGCYRTPE
LHEGFKGWIATQQIWMLFDAIPIAFSTFVVNVIHPHWYLVYPHDRLTSPSSLAPTATRHD
SDTTVSHDLQHSDAKVEKGMQQV