Protein Info for mRNA_3341 in Rhodosporidium toruloides IFO0880

Name: 11709
Annotation: K20724 TMEM33 transmembrane protein 33

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 39 to 58 (20 residues), see Phobius details amino acids 80 to 88 (9 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 183 to 199 (17 residues), see Phobius details PF03661: UPF0121" amino acids 4 to 242 (239 residues), 169.7 bits, see alignment E=3.9e-54

Best Hits

KEGG orthology group: None (inferred from 54% identity to uma:UM05446.1)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (273 amino acids)

>mRNA_3341 K20724 TMEM33 transmembrane protein 33 (Rhodosporidium toruloides IFO0880)
MAKVSYPHYAWAFGHALVLAGTIHTLLGVVTFSGRSKSYYLAYGGALVSWGIVVYKSLGA
PQLNKAYIQRALLDENVQYLLLALYWFLQRPIYVTLIPFATFSLFHTLTFLRTSVLPKPP
ATAAKSGSAAAAQPATPGAKASKLIQTWVKANYEKAMLFVAFVEVVVVFGRILLGAITFQ
NSLLSPLFFAHFLRLRYYLSPPTRQAFSWVSAQIDHATANPKCPPQVRKGVNFVRELIIR
YSESVISVQQPGAGAPGAGAAAAAGGPEARRNR