Protein Info for mRNA_3346 in Rhodosporidium toruloides IFO0880

Name: 11714
Annotation: K19844 BEM2 GTPase-activating protein BEM2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 790 PF00611: FCH" amino acids 12 to 78 (67 residues), 31.8 bits, see alignment E=1.4e-11 PF00620: RhoGAP" amino acids 424 to 571 (148 residues), 126.9 bits, see alignment E=6.1e-41

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (790 amino acids)

>mRNA_3346 K19844 BEM2 GTPase-activating protein BEM2 (Rhodosporidium toruloides IFO0880)
MDEVHSRLLREVNTYLDFFQRRQEIEQDYVDALRKLSLKAQQGDRALDDDLQSQVPTSWR
RAWLAVRNAVEDEARAHKGTADGLDRLVKTLSTLRDDRDRIRRRIREDLRSTANEHGEYK
GVVQRLRKMYERKVEELQHHEEAETAKDQDPAFSSKGGKEEGWPPEHWLNHENGPATSGR
NRSDSAASSKAGGSASDIESPPGSAVSPGLAPVFVSGATSSSSAAPSAYRDPPTGKQNVF
EAIAKRDWSGEKHRVNSIVRAVGNLAKGADPATALGPSRMVRNKQYGSKLKREAEQADRD
YRSGIFQLETLRLQKQRVQTSARESLKEFVNELASTFKTQLEKRVSDEILLGEAHTAIAS
HLVPDIASIDAQQDAQTFFAGVQDPAPADPAVYYVNAFVGECKSLLFGVGLQDYHAKHPN
MLVPLIVQRCIANVEATGLDQEGIYRVPGKLATIQQIVHRMEKGEEAFEFGPNDDPPAVA
GVLKLYLRQLPVPLFPFLPNDRRAFTAEHTSSPDTAIASLVRRIRRLSPPQQATLKALCQ
HLAKVAEHESVNKMSASNLALIFTSVIFGEDDVASLEAAMQGSKDNVMEILIRQQASLFR
DLPVDPPSGVRSRQSSDHISAPRAPVDSASALTASLSASAGEDSRGRSASASSTHLTVPS
ETSEGATGSSPAFRAGSIDSVYALYDQATTPGVLAPETSPLSAHHPAIPPPGRSTPTLVS
PPNSRPMSASPAAILNPPKLSPMAEHPQPLDEPLPPSRISPAQQPRREHSFDEPEPPLSA
ALGRHIHTPE