Protein Info for mRNA_3350 in Rhodosporidium toruloides IFO0880
Name: 11718
Annotation: KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
No annotation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (2424 amino acids)
>mRNA_3350 KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily (Rhodosporidium toruloides IFO0880) MAPRGKKRAASVDSDDDDSGGRTGTGGRSDNLLNLSLPPMHKLENIFSHIVERNAEKLSK VVSNLGRPLRVATMCSGTESPILALRLMFRALEAQKGIKVEVDHIFSAEIEPFKQAYIER NFAPPLLFRDVTELPNDKARTAYGAFADVPGNADMLVAGTSCIDYSNLNNIKKGITDGGE SGRTFFGMYRWVDKHRPKIVILENVCTAPWGDMVKNFAEINYSAEFCRLDTKKYYIPHTR TRVYLIAFPKEISKSSDPFGGAGALAAKWKELMKINERPASSPAEAFLLHSDDPRIHRAR QELSHQRISADGKKRDTVDWGRCEVRHSVARQKEKLGQRRPLTDWQDNGGKPTLPDGAWQ DWAEAQTERVLDLMDISYLRQAKLGVDINYKSAIWNLSQNVDRTTTSKLFGITPCLTPNM IPYLTDRGGPVVGLEALALQGLPIDELLLTRESTDQLADLAGNAMSSTVVGTAMLSALLL AGDKLDKVDKKKKKEDEDEEDEEGDKVMRPKKKEDKPEPTDEELEARFRGADRLAEHPVD LASFKPSPADLLDRAHRSARKCTCEGPEDVSEHKIYTCEGCGHSSCEAHKGKPEHRYVAE TAERESPAKFAADLRDFLPMRFTVPGFERDAMAKLVEEAEKKGAKTDKAVVERFLDVIDE ALKGAEFHFHHLNRRDFWTAVYGSERARLELFFGQAHIEWRIFVTAPAELGTLNPLRQRF EQPIARLKVPAGQTDLFDGSWSFNVPLVGSANKVEMQFSFDEGDDAESKNKSWRARLELE DFLEEKSPRRIKMSLKGSGKDVIDRQIDGEYEREDKCGTATHALYRRVDVKDETLKLFSD EVDPEPSIDIPTTWMVLEQAKIAPGGADVNETSKFSTIQTGFELSVTTGQCSQAETLLTA TVPLAKSPSPVWATDKWHEVDLQHQGAEVFSKLGWMLSRIPNWQALQEWQSVATGSIPNH TCARCAPVMPSIQWIKLLSLRGGKKEAWSPSVVAREDGQEAARYENALKDRPSPIIVHTR HVGNDFQLKIGLNAASLAHRALSQLPAASLKHFSPAAPKVEWRLLTSVSTDLGNESSPVF EVTSNRNNPQAANPENWNSKCKLRPEQLRSLWWMIEQEANPKPWVEEEVAEALLPQLGWY AEAKATREVEIRGGVVADAVGYGKTAITLALIASRQEADEDLPEETDRVPIKATLIVVPK HLVNQWKDEVKKFTKPAFAVITIQSQGDLKKYTIKDFQEVDIVIVAESLFTSGPYWCALA DFAASKRDIRYDAKAGRYFRHAVDEAMEAMGEQVRRIRTKGASAAHVALDKARKARDVDF ESETFIPESRHKANAKAKGKAKPLPSVKDVKFTRSANVGDDDWGFRHAGKNWSKLKAPPL SFFSWARVVLDEFSYTDGSPLVGIHSCRGRARWILSGTPPMRDFSEIKSISNLLNIHLGI DDDTEGVADMVKVRTKDATAAEKFRSYVDVRTKNWHIRRNKVAQRFLDQFARQNKAEIDE IPIETELVGVRLPGAEMAIYRELEHHLYSIDPNLAKLAKINIDKQSDRDRRLREALGQSK TPEEALLKRCSHFSLDLDEDKLKGDHAPDVCDFIAELRQEQLEDCKEQVKQQILASAYMH RRALAKDFYDFLENPTFHFKQWVARLFKDGFGDEDADKCLRELAEAAGCTGDEEIGKAPD NAKPLPKYIARFMNEKDKKEKAFDAAEWAIEQTVVIRDSVVTLNKLARELVGRFRSARYF DTVRTVLRTTEDEKAAEKDTLAILSCCGHHGKLADVEENARWNKCIHPGCGALVQKLNIL TAESLGTDRDSGHFGYKLETLVTLIQQTPKDDRVLVFVQFDDLFDKVHEALSVYKIPTTV LQGTSKKQSDLLTAFQKKSADGAKVLLLRATDSSSSGANLTIANWAFFVSPLLTDSKAKY KALATQAIGRIHRYGQLKTARVVHLLTHATLDVPTFSERNDCDVEEVMKTQPTQRGEIVN PSRAKEGKWERKGKAPAKKAKKEESEAEAVGSDEEAKSSDESDGEMLRQVKKAASPAKKG KAKQPVVVSDDEEVEASESEEEEDEDEMSDEEETESEDERPTKRSRVEKKRKDEDDFSAS DDESDAPPRRAAPAKKLPRRMASAGKPLVLDLSSEEEDEDEEEKVVVTAKAKGKGKAKAP EPKKAVSKRRIADSDEDDSEDEAPSKRASTSKAPAASTSSKPKSKPSSPAQPAFKKARSS FIGVVIESPKRKQSTLGRFFGKKPAEKEEAAASVAKKETKQKEKGEEKKEEKVEAMQVDD DSDDERETTPSPVKAKPASSSSKEKEAATPEPQDDSPSKERQVTPELEKEAPPAVEEEKA KSPSPAPAPVADAKEDAASSPRSASADKEDSRSSAASSNGAGIDTALTTPAFELQRQLGD KASVGPVDEAEEEVAAMEVEETAA