Protein Info for mRNA_3354 in Rhodosporidium toruloides IFO0880

Name: 11722
Annotation: KOG2395 Protein involved in vacuole import and degradation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 926 PF17748: VID27_N" amino acids 1 to 162 (162 residues), 132.5 bits, see alignment E=2.3e-42 PF17747: VID27_PH" amino acids 351 to 467 (117 residues), 56.5 bits, see alignment E=4.7e-19 PF08553: VID27" amino acids 564 to 922 (359 residues), 526.7 bits, see alignment E=4.6e-162

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (926 amino acids)

>mRNA_3354 KOG2395 Protein involved in vacuole import and degradation (Rhodosporidium toruloides IFO0880)
MFLVNRLFGISGQSGPAPELTTLDGGRLFLVRPDSVKGSRECIFIDASLSIRRTTHAHMY
QLVVTRAFQEGEEQLLEEDAENSDERSFLLDSSLFLSLGPSLDPISTSTSSALSFTWLDP
DGDGPDDEFEFVLPSDGSVSASQAEEFERLCWRCMWERKEVREWPEDEREARRVEETLEE
EFKVERAPQQPASSLLYPTLPPTDSPAATPSNPAPSSASTPATTSRLPPPVSSSKAPLFR
ATSPDAESDDEAPAAGQKTTSVLPDSDEEDAFDEAREGVDDSGDELAQQLRQKATIGGGG
PAQKTAASPAKGKGKAKAAPVPVEDPIAPPMPRPPVPAAPSTSSDAPAPVITVLASLHLY
DRATGLFMLQDDSVKAGLYKLGQAGKGHWLVVESVGKEADVWVSQAITAETTVNFAEKER
AMVFNYTAPPSSDDSQSQPITYTWLLRLSTDEAFAALQASVSAALFEDKWGAGSWGKLKE
DDREYARKAWLEEDAEMWDAEKEDAEEAEAQEEESEEEEEPEPVPESDDEEYDSDDAVRA
PSASRAFTSKRPSRPAIGTKKRPKNSALAVGYKEDLSFVVQGDMIGVFKQQREGGKKLKF
VTSIVNIATPDKKGFTPGKVMLHNQDTSMILQNPLAPGSLYRLDLETGKVVDEYKVSSDF
SVSNFLPDSKFAQTTQQQTFIGHSHNGLFRIDPRLAGSKLVESEFKQYATKADFSAAATT
ESGRLAVASSKGDIRLFDKLGKNAKTALPALGDPIIGVDVSADGRWLLATCRTYLLLIDT
MIPDSSSSKFAGQLGFDRSFPAAEKPTPRRLTLKPEHVAHMQEVQGGEGVSFTPAKFNAS
LSGDPERTIVTSTGPFIVAWNFRQVKSGNTSNYTLRRFSEEVVADNFKFGGDREIIVTLP
ENVFVEEKKKLKAPTRASIVQTWDGL