Protein Info for mRNA_3357 in Rhodosporidium toruloides IFO0880

Name: 11725
Annotation: BLAST dna-directed rna polymerase i subunit rpa43 [Rhod...

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 529 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF17875: RPA43_OB" amino acids 162 to 271 (110 residues), 66.6 bits, see alignment E=1.7e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (529 amino acids)

>mRNA_3357 BLAST dna-directed rna polymerase i subunit rpa43 [Rhod... (Rhodosporidium toruloides IFO0880)
MAAATAAASLRLASVGSDPSSSSEFVSFKATMRLPIAPVFAGKGDNMFPGHDGGMDGVRE
VLAGWVMRYLPPIRAVLLSFSPTPRFVHPAASFPAALCPFDNLQSVSMKDPRSLLSSPQP
GAANGDEDDEEQEVVRLKTLPMVDGSGFTLANVEWEGVGWRPRVGMKVVGTLTLATPSHV
SLLLHNLFNASIPSSHIPTSTYEYDPECPVPAVVLERRTATVPFATNVAKVGWWVHRKSR
EPLGGADGRLEFTLVDLTNTNSLLSCTGSLLADPFSPSAVAAIRSSISTASAPTASSTLL
KKGKKRARDSDEESDSDAEEESEFDGDDDDRVGTGIPRPGRATAAGQGIARRNEDSSASE
DEDEDEDDRESIMKLTSLLIPVDERCSTFAHQGPSDRSRRRRLSYFDPPAFNDRTPAPPR
PPRAPSRPSSLSPTSPTFAQHRSASKAWSSVSPAPSPSRAETPTRPARQPRRSVSIERDR
TVAALEGQPARVSGESPRTASGARNVGREYTPPPSPPASEEVPVQVVVE