Protein Info for mRNA_3363 in Rhodosporidium toruloides IFO0880

Name: 11731
Annotation: K02871 RP-L13, MRPL13, rplM large subunit ribosomal protein L13

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 174 TIGR01066: ribosomal protein uL13" amino acids 14 to 140 (127 residues), 174 bits, see alignment E=7.2e-56 PF00572: Ribosomal_L13" amino acids 21 to 141 (121 residues), 188 bits, see alignment E=3.5e-60

Best Hits

Predicted SEED Role

"LSU ribosomal protein L13p (L13Ae)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (174 amino acids)

>mRNA_3363 K02871 RP-L13, MRPL13, rplM large subunit ribosomal protein L13 (Rhodosporidium toruloides IFO0880)
MPKITPNSVVGNTALAYARAWRAVDADGQILGRLATRIAIVLMGKHKPIYDPASDCGDYV
VVTNCEKIRVTGKKAEQKVYRHHTMYPGGLKTITYKTMMEKNPEQIIRKAVSGMLPKNRL
REPRLERLKIFTGTETPYDANIIRDHADEFGKTFKRAREVEQQASEVAQAQVSA