Protein Info for mRNA_3373 in Rhodosporidium toruloides IFO0880
Name: 11741
Annotation: K00390 cysH phosphoadenosine phosphosulfate reductase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00390, phosphoadenosine phosphosulfate reductase [EC: 1.8.4.8] (inferred from 61% identity to cne:CNB03860)Predicted SEED Role
"Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8)" in subsystem Cysteine Biosynthesis (EC 1.8.4.8)
MetaCyc Pathways
- superpathway of L-methionine biosynthesis (by sulfhydrylation) (12/12 steps found)
- superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae) (9/10 steps found)
- assimilatory sulfate reduction I (4/4 steps found)
- assimilatory sulfate reduction III (3/3 steps found)
- superpathway of sulfate assimilation and cysteine biosynthesis (7/9 steps found)
- assimilatory sulfate reduction IV (3/4 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 1.8.4.8
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (308 amino acids)
>mRNA_3373 K00390 cysH phosphoadenosine phosphosulfate reductase (Rhodosporidium toruloides IFO0880) MPSSPVASTSSIPFDPARLDEINASLADASPQDVLTYAIDFIPGLFQTTAFGLTGLAATD MISRISRKRKQPHAVPLIFLDTLYHFPETLDLARRVEKKYQLELQTFRPPGVETVEEFEK KYGEKLWETDEDTYDYLVKVEPARRAYDTLGVKAVITGRRRSQGADRATLEPIEIDSTGL VKVNPLCRWGFQEVKDYIDMAGVPYNPLLDQGYKSVGDWHSTVKPKDGEGERSGRWASNK TKTECGLHKDYFAMKRAFEKKQLEQARAAADKARGDEEVGESSVDLSQETDATSQDLGAS FSDLKLGA