Protein Info for mRNA_3374 in Rhodosporidium toruloides IFO0880

Name: 11742
Annotation: KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 679 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00787: PX" amino acids 224 to 329 (106 residues), 36.6 bits, see alignment E=4e-13 PF09325: Vps5" amino acids 348 to 566 (219 residues), 56.5 bits, see alignment E=3.2e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (679 amino acids)

>mRNA_3374 KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins (Rhodosporidium toruloides IFO0880)
MLSPSLLGPAATAIVGGVGEDKAKSLSRSSLSTRTSVLRSCVAEKDSYCAPRCCSRSALA
LLPPNPSSSANSPSSTSTPCARLFPTRPALRRTSDDSTSFAMNDYDPLHPAAYEPARHNP
HPGSDLSSVAPRAPLPGYDRDYRAPGFGPASPPTREGDAWQQGGTSGDGWGASGEGSQQQ
GRTAGLVPRSAQVADSTSGRRAAGEAGQNGGQVPQQREGFIRIRIMGLERNRRDIYIKFN
AETNLPNFHHSSYRSISRSYGEFMSLVSALSVTCPQSIVPALPLAQTSAASDEEDDRLIK
AAFQKWVVRVTSDPAVVRDEEMRSFIESDFGYTARSRKKSSAASFSFSRSSRLPGELDDP
LTLAKISMSRLESTFHDTAKTIDRVSKTRRAAATSVNDLGDQLNTFALAESYAPLAAGFK
RLARSVKVDADLLAVQSIQEQITLGDMFVYQSANAKSAKETLSGRDLVADEHRQAVKSSI
SKRRNIEKLKSASSLRADKVNEALEDLDEAQRYEETLARRLQGISTNLQPSLTRHSIDTH
TDLLSTLLEHARQTLLCEKQRLKEFELLRPDVRAIRRQEAGVIYHTTPGGQVMGRTGSAG
SASTSSRLAAAPASPTPARVAPSSPADPLGGENGRDLGSMAQKAQKRSVRSMASSVHVEG
DRRQKVDARMAASMLANGF