Protein Info for mRNA_3381 in Rhodosporidium toruloides IFO0880

Name: 11749
Annotation: K06027 NSF vesicle-fusing ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 821 PF02933: CDC48_2" amino acids 188 to 260 (73 residues), 33.8 bits, see alignment E=1.9e-11 PF07724: AAA_2" amino acids 324 to 429 (106 residues), 27.7 bits, see alignment E=2.2e-09 PF00004: AAA" amino acids 325 to 465 (141 residues), 137 bits, see alignment E=4.4e-43 amino acids 606 to 721 (116 residues), 40.2 bits, see alignment E=3.8e-13 PF17862: AAA_lid_3" amino acids 492 to 548 (57 residues), 34 bits, see alignment 1.7e-11

Best Hits

KEGG orthology group: K06027, vesicle-fusing ATPase [EC: 3.6.4.6] (inferred from 66% identity to scm:SCHCODRAFT_71994)

Predicted SEED Role

"Cell division protein FtsH (EC 3.4.24.-)" in subsystem Bacterial Cell Division (EC 3.4.24.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.24.-

Use Curated BLAST to search for 3.4.24.- or 3.6.4.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (821 amino acids)

>mRNA_3381 K06027 NSF vesicle-fusing ATPase (Rhodosporidium toruloides IFO0880)
MSWFSRTGDQQPQQQPQRGYSPLPPAQQPTRHHLPTSYQQHNSPPPPQRDPYASSQREKP
ASLSRPQPPSYGGSGGAARGGRFAVVEAPSPSHALANRVVLNEQDWGGVPYVVIKGQFVY
ATMFDPSIPRGAIGAARLVRQFAGLSQSGDVVDVEPFEPGQLGSDVYLAALDLEVGYWFE
KNAQPTAYSADELQDVFRRAYDGLIVTIGQPLVFDFHGQNLRATVKGVQCLSLEGKGAGG
HGRTGILTSQTEVNFVKDPASAIKIKSSAKKAPPNAILAPNFKFEDMGIGGLDTEFSAIF
RRAFASRIFPPGLVEKLGIQHVKGILLYGPPGTGKTLMARQIGKMLNAREPKVVNGPEIL
NKFVGQSEENVRKLFADAEKEYKEKGDESGLHIIIFDELDAICKQRGSTNNGTGVGDSVV
NQLLSKMDGVDQLNNILLIGMTNRMDMIDEALLRPGRLEVHIEISLPDEQGRVQILTIHT
AKMRQNGVMGRDVDLLELATLTKNFSGAEIGGLVKSATSFAFNRHVKVGTLAALSDDIDQ
MQVVREDFMNALDEVQPAFGVNEEELQAVVQNGIIHFDEYVHSILRDGKLFVDQVRTSQR
TPLVSVLLHGPPGSGKTALAATIALASEFPFIKLISAENMVGFTESQKVAHLYKVFSDSY
KSPLSVIVVDGLERILDWVPIGPRFSNSVLQALLVLLSKRPPKDRRLLILSTTSNRSMLA
EMDAMDAFATTLRVPAVTTLSQLVRVLEDVGLFGDSNKAEQQRAINLLRQAGFGDGEEAP
GQGRSFSIGVKKLLSLVEMCRQEDRGSAVDKLVAELVQLQM