Protein Info for mRNA_3385 in Rhodosporidium toruloides IFO0880

Name: 11753
Annotation: HMMPfam-Gamma interferon inducible lysosomal thiol reductase (GILT)-PF03227

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF03227: GILT" amino acids 49 to 172 (124 residues), 41.2 bits, see alignment E=8.7e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (294 amino acids)

>mRNA_3385 HMMPfam-Gamma interferon inducible lysosomal thiol reductase (GILT)-PF03227 (Rhodosporidium toruloides IFO0880)
MLPTALVFLSTTLALSAPLDSPAQLPFLPSSLSSPPPLDISNSTRLPLTLGVMSLCPDAR
LCESVMDRVFEQVTSVAIRSEGKEGGGGGGGKKEGKVRVGELVKLRVEFIASRNSSAPYG
TTCKHGDRECRGNVQQLCAERYWGAEGAWEFIQCLNYDPNARIGSEQAARECGRLIGREW
TEKLQSCVDGEEGRKLARKSAKRLSKVGVEKSCSILHPRFDLATLSVGPRSRGFQALDRA
RVGEGERAPLKSGSWRGVEGVDRRCIVVPLALAARTCLFSAVFRSSSFANSPNL