Protein Info for mRNA_3390 in Rhodosporidium toruloides IFO0880

Name: 11758
Annotation: K06617 E2.4.1.82 raffinose synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1179 transmembrane" amino acids 1032 to 1051 (20 residues), see Phobius details PF05691: Raffinose_syn" amino acids 351 to 721 (371 residues), 80.2 bits, see alignment E=4.3e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1179 amino acids)

>mRNA_3390 K06617 E2.4.1.82 raffinose synthase (Rhodosporidium toruloides IFO0880)
MATGTFDPPLASRTFLPSSSSLSSPSSAPNSHSKDEASEQRIWFTYLPPTSTSLNDKEGG
RDERVAEVWTNLPLSPSSTPSSSSSPPDSAWHALPLLPSAAGSKLFTASLPLPKDGGEWE
FTYRFRSKEGEVEWLGSAGGNGKIVVSSVSQDQAASGWNGPEGKEWTSPPAAGTERVRVG
KFSRGTEGKEGNWDVEMKREWIGLDGWGEREVEGLVVEQSSRTWFAPRPLPRSSPSSILS
HLSPTFPAQLLVLRFLPCQTDPWTRYTVLLPFSTRQTCAALVGVEGGEKMLLRCTKDAGG
AQEGHLAIAWGEEGDLQTLIERCVAAARSVLSPSTSISSPSPLASFALKPLGACTWNALS
RGGQTDYSATSLLSWLDSLRSSSSLAGEAIKTVLLDDGWQDTETYIDFSVGAGEGDREQG
ERRALKSFQCSMEWFDLDESSSDADEEGKEGKRTSVSLDSGYEGSPAVGRGGELPSQPRE
GVCVELREVVRRVKEMGVERVGVWMTLCGYWHGLHPDRSLADAYTLRRFTVHSAAHPSYN
GHIYLPAQSDLRTFYDDYFSSLRAAGVDFVKVDDQATVDCLVAQEVGEDEEEGATPDAVS
EYRFAMLEAMCAAAIDAFGADGIIHCMAGSPRIWGGSLGIVGATDDGAISTVRNSDDYFP
DAPDSHRWHIALNAFTTLLSSALRFEPDFDMAQSAHEFGKAHLALRAFSTAQVWMSDEPG
ADLSGWEPLLAMTKQGVRVLQAGEGQIGTVLEGSVGNDVLGRLNGAQTGALNVGLPVASA
KGARIGVWNCLPADRLVDQRLTTTIDSKDVADSLRSVAASGSGSFVLVDPATLSATQVDS
TDIATASKLPHRLAKPLVQTQVAQNEANVLTVAQLFDLPAASSAKSVKIACLGLLDKTVG
LAAIRSVEIISGKKTASGTGQAAETTVSSNASSGTASAERLLGSTSSLSTQSLTSSPNQT
LIRPLSPTDRSSFPVPQGRVPFLLAYFAGFFRSSIVPNSSTSTSTASSRTPRTEIHSLAR
DILRQPVRTVLSEIKALVSFSIFTVFWIVGWRSNGTQRMIEANPALANASASTPAQSTSS
DLSPEHKARLCIELEYLSDRLAFYVSPAPPSLSSLRLFLDGAPIDASVLHEVSSDAGIVE
FQVESAWKGLKSQEGAGDGGKSQASEMEKPWVVQVDFAG