Protein Info for mRNA_3402 in Rhodosporidium toruloides IFO0880

Name: 11770
Annotation: SUPERFAMILY--SSF49899

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 41% identity to scm:SCHCODRAFT_47252)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (415 amino acids)

>mRNA_3402 SUPERFAMILY--SSF49899 (Rhodosporidium toruloides IFO0880)
MTWLGVGGAVFLLALVVGIVFATKSFSAGSSSAGSSSPTGGSSDSGSGSIGGGDNPTTEL
AMDPTGSPALSDGSSSGSPSATAPASRGSPAPSAGSSQGSSKSTAATPAASQPAGGGGPY
KLVTTYAGNTFFDGWTFWDTADPTHGQVTYLSSTAATSNKLISTSAKSAIMRVDNTTKLA
SGAPRNSIRIDSKDAVKINSLIVADILHMPTGCATWPAWWSNGPNWPAGGEIDIVEQVHE
ATVNQYTLHVNDSGCKRASSPDITGTAVAANDDCNAHNKGNTGCSYSETASNSYGAPFNK
AGGGVFATLFSSDAISVWFWSHGGTDLPKNIASGAPDMSTWGKPSATWPKSSCDIGKYFQ
DQTLIFDTTLCGDWAGAVWPSECSSKAPTCADYVADPTHFNDAWWEVASIKVYSI