Protein Info for mRNA_3420 in Rhodosporidium toruloides IFO0880

Name: 11788
Annotation: HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1138 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details PF04675: DNA_ligase_A_N" amino acids 19 to 216 (198 residues), 32.1 bits, see alignment E=1.4e-11 PF01068: DNA_ligase_A_M" amino acids 307 to 587 (281 residues), 79.7 bits, see alignment E=2.4e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1138 amino acids)

>mRNA_3420 HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091 (Rhodosporidium toruloides IFO0880)
MAAPAPPAPSSLYANPIAFSLFSSLVQRIGAVPPVRKGARRSSGPASGKPKQHRLLEAWV
AAVKAEYGRDLPEGTIVLFFRLFFPDEGVRRRYDLREMLLGEALEGVYGARRGTFSSWNA
QSDVGRASSTGCLGREVQFWLERDEKRAKGKGKELTLGRVDELLDELATLSSASAADVQA
LRIARRRPVKAILSDLLLPLAPPDAAVMVQIILRDLAPLLYPPPSSSADIALSSYCLTSY
GFVGLAEAMQVWHEGLPRLYRTVADLNWVTWTAEQAIRRGVSLPRPRPQIGLPIKVPKTE
KPSSCARATKHLDGLVAVETKYDGERLQIHIDLSLPPPQQIRIFSKSSRDSTETRRGLLP
IIRASLGLPLDPVAQALHPQLYQRLLHTLSTPTARPPIPPTKLVIEGEMVPYHEGRRQID
EFWKLAFAKAGGGVPLEARSTKWNTRRRAAQEDDSFTTGATPSPNKPMQQRPPGSAEVEG
EGDALVGSNLHLMIVWFDVLYMDGESLLDEPYQARRARLERLVLPIEGFSRLAESVTVDF
DNKETALASLRDRFARIIASRCEGLMLKPLSSAYNDPRCGQRWVKLKKDFIPGAGDTMDV
CIVGASWQRKRARELLVPPSVYTTFFFGFRADDLGASLPNSRKPHYHILFSTSYGLSREQ
LAQVCFEVREGRPERFELETSADGSAFKRVDRRKTLGPYAVYDAACCSFTFSLAEHLYSN
TTRPSVICRQPRIMELNGAGFQRTPGCPYYELRWPRIIKASRPDESGSPLSLADLQRVAH
EATGTVSSSAAALVDQIWSAAKLDGRKKESPEEKYEREVKMWVQKLEKADGIMRTPGEPV
GGGDNQLKTLASPLKRSESLGGLAAAESRRNLDKSHSAMPTGQAMTPHPDAHRRLGSAAP
ATMPATPPRLRSSVAMGRSVSSPCARSDAPSPPSQVVHPPVVDGSSINTLLRRRMIAQTG
STLADLSASSSITRKRCRLTSAVSQQASVQLRSFASLPISLYAVESPLEAAKFDFASYAW
TLYPPLPLGAAIPEPRNPHLSLSNYISTPTKLLVAAGLAPDTELAASKTRRDESLRQGVI
YVSPGPASDDFVRRLEEDACRAKQLAGQRATVWVLKREALETRGGCDLGMGSDVLTVL