Protein Info for mRNA_3421 in Rhodosporidium toruloides IFO0880

Name: 11789
Annotation: K14297 NUP98, ADAR2, NUP116 nuclear pore complex protein Nup98-Nup96

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 985 PF13634: Nucleoporin_FG" amino acids 261 to 344 (84 residues), 6.5 bits, see alignment E=0.0017 amino acids 347 to 410 (64 residues), 21.1 bits, see alignment 4.6e-08 amino acids 364 to 446 (83 residues), 27.9 bits, see alignment E=3.7e-10 amino acids 448 to 536 (89 residues), 28 bits, see alignment E=3.2e-10 amino acids 531 to 610 (80 residues), 21.6 bits, see alignment E=3.3e-08 PF04096: Nucleoporin2" amino acids 841 to 985 (145 residues), 158.6 bits, see alignment E=1.3e-50

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (985 amino acids)

>mRNA_3421 K14297 NUP98, ADAR2, NUP116 nuclear pore complex protein Nup98-Nup96 (Rhodosporidium toruloides IFO0880)
MFGGTGSTFGGFGQQQQQQQQQQPGQTGGGLFGQTGTTFGSGGFGASATPAFGQPAQQQQ
NTGFGGFGAATSTAPAFGSTANATPAFGQPAAGGGLFGSSAPATGSTGFSFGGGTNTSTF
GPPAAGTTGTTGGLFGAKPATTGFGGFGQPAQQQPAATGGLFGGASATPAFGAAPAGQPN
GTATAPYQATTVMEPPQEEGKPPPANQTAHQFQSITCMPQYKNYSFEELRLQDYQANRKG
PTAGAAPGFGSAFGASSTPAFGAAGTTGTTGGLFGSTGASATPAFGAQTTGTGFGSTSGT
TGGLFGSSGTTSAFGQPATSQPAAGGGLFGSTTSQPAQTGGLFGSTGATNAFGQPATSAA
PAFGGFGAAAQKPATTGFSFGATNTTTPATGGGLFGSAQPATSAPANPFGQPASTAPATG
GLFGSTQPAQQAGASTGFSFGQTANKPLFGSATTTSAPAFGQPAAASTAPKPAFSFGSTP
AAGTTGGGLFGNTQQQTGTPAFGAPASTAPATGGLFGGTSTFGQPTQQTGATNTFGSGGL
FGAKPAQPAGGLFGSTTTQPTGGLSGSTTAQQPAQQTSLFGSTQQQQPTLGGLGGSLFGS
TTAAPGQQQQQQQAAYASADDANAYGSNPLFASVNPSPARPLEEKKKPPIFTAFRGTPIS
RSSTKITRLRGFGSTSTASPAPGTPLGLSTSGHGSFTSPGTPAGRGSPLRLVNGISDDVA
LSPNAFVSRPSVKKLVIDKKSIGKSLNGSASPAKDGSATPARAKVTFNPEVELPGRSSLF
AGGASTRGSAVGDENEPSFALSEGAMEGNTTIDSPSAAKSAASSDWPARRPPPTPSAPKH
GDYFTIPSLDVLQKLPASKLRSVPDLVVGRVGYGQVAFSEPVDLSTLPAVEELLGGIVRL
EDRNATVYPDEYDDVKPPPGEGLNVPATITLENCFPLDKATRKPIKDKDHPKVQQHIKRL
RNLDGTEFVDFDAETGTWVFDVQAF