Protein Info for mRNA_3443 in Rhodosporidium toruloides IFO0880

Name: 11811
Annotation: K06694 PSMD10 26S proteasome non-ATPase regulatory subunit 10

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 PF12796: Ank_2" amino acids 85 to 152 (68 residues), 48.9 bits, see alignment E=2e-16 amino acids 156 to 221 (66 residues), 32.4 bits, see alignment E=3e-11 PF00023: Ank" amino acids 89 to 120 (32 residues), 26.6 bits, see alignment 1.6e-09 amino acids 123 to 152 (30 residues), 29.7 bits, see alignment 1.6e-10 amino acids 195 to 222 (28 residues), 18 bits, see alignment (E = 7.8e-07) PF13637: Ank_4" amino acids 90 to 137 (48 residues), 40.4 bits, see alignment 8.6e-14 amino acids 124 to 174 (51 residues), 45.2 bits, see alignment 2.6e-15 PF13857: Ank_5" amino acids 112 to 162 (51 residues), 39.4 bits, see alignment 1.4e-13 amino acids 187 to 228 (42 residues), 27.8 bits, see alignment 6.2e-10 PF13606: Ank_3" amino acids 123 to 150 (28 residues), 24.3 bits, see alignment (E = 6.8e-09) amino acids 195 to 220 (26 residues), 20.3 bits, see alignment (E = 1.4e-07)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (259 amino acids)

>mRNA_3443 K06694 PSMD10 26S proteasome non-ATPase regulatory subunit 10 (Rhodosporidium toruloides IFO0880)
MASQIPTQDVHRLAREGNASLLRMALEDNADLVASVDSDSRTPLQNSLSAIPPSVACVEA
CLDAFNNLSDGGFGENRRTKVLENQDEVGNTALISAAAIGNLEILTLLIGAGADVNAVNN
KEQTALHYAASKGHVNIGRLLISKGADINARDRANQLPLHRAASTGSVPFIHLILASKSP
NKPEKPRLNLLDRAGNTPLHLAIESGHAEAAVTLIEGGADRDRGDADGTRPEEIEGVGGT
EAKRVREYIVQRCGPLQAL