Protein Info for mRNA_3462 in Rhodosporidium toruloides IFO0880
Name: 11830
Annotation: K17978 NUM1 nuclear migration protein NUM1
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"FIG00538201: hypothetical protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1944 amino acids)
>mRNA_3462 K17978 NUM1 nuclear migration protein NUM1 (Rhodosporidium toruloides IFO0880) MASPPSPTHSTHSFLSEDPYPSYPHNTHSLTPPRSSSPPLTPSALLNRLESLLRAKAEEV QLAGQLGQALLSQQQELEARIREIAEVSKRFGASDEAEESDASGSSGPGGGKEVGEATKK SLKALEDELEVWERSNGEMYQVVGTAAARGVPTLEAVQPSSSDGGIRRARSASLAKRPSM ADLSHPAPPADPSSDRRARNAPSSHRTADIELATEIGQSLLVEVRRLQALLVERDEKVRV LEGEREECVREREAAESARRSVEESVERYKEINWELELATQDLRTSLTTAQSSLQKTESA LSRQTKDLAHTRDALDFQRLETDRLAKELDQLKQKHETDMANMRKAQAGLQRDKSDLQGT LEGLKNELKGQKRTFRRGGALGGSPGPGTPGWRGPNGEGSDDDEFGGPRDDVFRSTARRR TGEGFPSSAFGENDPDAMFGATGDSPSNSPIRPHGYASEADSLRASLAHAQRQIQTLRTS LQREKQGKMELRRKLVGLGGTVGGKDGKGEKVWGDDPLDGSDSDEEDGLEGDLVGTKPKK QKLAAGGYVTTDEEDDDLLAVSRTPARQKGNSLVAPRSARGSARGSARGRGSAARRGGRV PSRLARAAFSDSDDAVEDKPAMDVDEEASPFPAAALGDVDGASIFEHRFQDEEPSPASTR TRADDSFDIDSPTRALDSSVLSRTSFTAQRRRTDRAVSVETEDSFSTGRAGGPTLADMLG GSTTSSRPPRPASIGSLASILGRTRQVSVGPVPEEEDEVAQKTFADKGTATDPLPPPEPV ERIVEVQVEKIVEKEVEVVRTVEVPVDRIVEVPVDRIVEVEKRVEVPVDRIIEVEKIVDR PVEVIKTVEVPVDRIVEKLVEVEKRVEIPVEVIKIKEVPIEVEKVVEREVRVEVPVDRIV EVEKRVEVPVEVIKTVEVEKRIEVPVDVERRVEVPIEKVVERIVEVPVEVVRTVEVEKIK EVRVEVPVERIVERLVEVEKRVEVPIEVEKIVERVAEVEVEKRIEVPVEVIKEVRVEVEK RVEVPVEVEKRVEVPVEVEKIVERVIEVSVDRIVEVPVDRIVEVPVERIVEVERVVEVPV ERIVEVPAPKPSTTDANVQATPPQPAPVSLANAASRMEDRALANQPSLSKLTASYGTISQ GDRDKTLSSFSMLRGLRSAPSESSEDDARSETTDRGAPSRQTYYTDTETEVDYEDARESL GGATSSLGRPSFDRQPRPSFSGSTNTRSTSMQDFVSVRSGRTGAFADEEDSEAEVLAGED DDETQAFRRTIRGRPSDHVLSAEPEVKTVYVDKVVYVDKPVEVEKLVYVDRVVEKRIEVP VERVVEVEKIVEKVVYVDRPVPTPASTRAAEPEDDLDEAAARASAFLGDADSRPVTPSPF HDRSNVELGSASVAKGKGKEAMGPPPLPSARKARSTISQASTKSTRQAPPPRPTSPPPAD LLFRAQSPTFDDEYARRSTFLAPPVPNTAGQHTLRSQASGLSTATSTRSSAPFANLSKVR QPASTDMAATPRSVRMSRQQLSGSSARSLSELSMHSDLGAHRRMSMASEATSDGGYDAPG APLPGSTRAAGDSTDPEVIHAITQTMIGEHLHKYTRRKVGKGYSENRHRRFFWLHPYSRT LYWSAVDPTAPTAAQAKSKSTYIESVRQVLDPNPFPPGLHQHSIIIRGPDREYKLTAGTK DRHDMWFTAINYLINRPEGSAEAASTPNSRRAPSTPALNSTSSRNGSKSLVGNESGDFFG IPDKIYSFGAASLSESRLTPKARQSSKVSVGTFGTTPRRPETAAAQYRRQSVMLGSPRSM RSMSNYGDFDAADGSLEVVDRNEIPDMADEDEDFEGLENVRVCCGEHDVGSLSRRHRNSH HRHQHSSDADSRSNTPGPRPPSRARSKSSSNTLGSLSRKMASISTPRKSLGGKPALPAQP TSSRPLSPLPLGDRNGTVGRRAIA