Protein Info for mRNA_3467 in Rhodosporidium toruloides IFO0880

Name: 11835
Annotation: KOG4503 Uncharacterized conserved membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 transmembrane" amino acids 190 to 218 (29 residues), see Phobius details amino acids 301 to 323 (23 residues), see Phobius details PF10104: Brr6_like_C_C" amino acids 193 to 321 (129 residues), 124.9 bits, see alignment E=1e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (389 amino acids)

>mRNA_3467 KOG4503 Uncharacterized conserved membrane protein (Rhodosporidium toruloides IFO0880)
MDVDTPPRPSTSFPPSATATSSDPFHFRQPSSAPETSTSTPPLSFDAAEFHPKEALGLAG
EEVVQEVSMTAADESEILDDEEAEEKEERALMLRRGGSESSSRRRQASGSSRRRRAHRSG
ETDDEGEEGHDSAGDAGFLGVLKKTVGRQAGDSQFSFQVHHHHAPGMGGLQQQQSGAQPE
RWMRSSTPYVLLGYLQFGSLTLLAVLVLSLLSLFLYTLYTDIQARLAELTIELRSEIVQC
AKAYIDNFCQEKRMPALARQCVEWEECMNKEVVVVGKTRVVAETLAEVVNGFVDVISLKT
MLFVLLTLGITIYGSSVALSVLASRPSPPPPSPSPSAHPHFPHLSPYGTPAYPYGLPYNA
AGSQWVVENDGGRKEQLGLGAPAEGKKMA