Protein Info for mRNA_3470 in Rhodosporidium toruloides IFO0880

Name: 11838
Annotation: KOG1492 C3H1-type Zn-finger protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 657 PF00642: zf-CCCH" amino acids 329 to 351 (23 residues), 21.3 bits, see alignment (E = 2.1e-08)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (657 amino acids)

>mRNA_3470 KOG1492 C3H1-type Zn-finger protein (Rhodosporidium toruloides IFO0880)
MADEAAIRAEYERLLSAQQSAFDAQQAIAAAFGPGSMPFAYAPTRGRGRGRGRGRGAPAA
QGRQFRNATWVAPGLADTSNASASVSTPTPSPAPVPAAPVPVRPYAPTVGRGGYRNQTLV
LNASSSASTASRPSSAASTLSAPATTSGRTTPVAQAIEKMEVGESSTPAKDKGKAAAPAT
QGAREVVIDGVIFVADTRGNKLVRKSDIASTASLATASTSSSTTVTSPPSPSLSTPKRTS
HLGTTYIRTKSGNLVSLGFARRKKELAEQKKVEMEEKRKRLDNLVGIVKGVQGARNAAGG
ARGRGRGRGRGRGAFAPSSGRPAPPKSDKLCRFFQRTGQCSRAHTCPYVHDSHKIAICPL
FLRSSCPRSASTCPLSHSPNAHRSPHCLHFPNCTRGSACPYAHVKVSSDAPVCRDFVELG
WCEKGEECDKRHVRECWRFAETGKCEVKGCREPHVLRRVHTASEDEGDAQGGEEDEDEAE
EEEDAIEQHEAEQVFGATGSKRPRRESTDTPFPSTAPLGISGAAGRRLTKKLKKRDSEGG
FSQQHDFVQLMVPLSDEEAGGEVEEDEEMSVESDDLESEDDDQVDEEEEDEVQATDASAG
AAGDASLPDAQPTSATVHPEPATAGDDYVEFDYGDDDAAASDPDEEDDETVEQLLRR