Protein Info for mRNA_3496 in Rhodosporidium toruloides IFO0880

Name: 11864
Annotation: KOG1198 Zinc-binding oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 PF00107: ADH_zinc_N" amino acids 168 to 262 (95 residues), 59.7 bits, see alignment E=3e-20 PF13602: ADH_zinc_N_2" amino acids 202 to 346 (145 residues), 89.3 bits, see alignment E=4.7e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (352 amino acids)

>mRNA_3496 KOG1198 Zinc-binding oxidoreductase (Rhodosporidium toruloides IFO0880)
MAETMRAWVFRSSGHPSKVLKLEQDWPKPTPSGTRILVRVKAAALNPVGYKAMVLPGLRW
MQKKPAVPEHDLAGVIEGGDLSGTDLKVGDEVIGFVPADSTMKSGQGVLAEFTLVEKNLL
TKKPDNIKFTEAATFPLTTFTSYWALKRVAGLTKGSGQRVFINGGSGGVGVYAVQLAKAY
GAYVVTTCSPPSRKLVESLSPDDILDYKESDLVEQLATKYGDKPFDIIFDTVGHNSDLYY
KSPKFLKKDGHFVDIAGPHFESNFISILGAGVELINRNLRPAFLGGVPRKYKFAMMTPAE
GELDEMAQFIREGKLKAVVDEVFPFEKALAAYDRQMSNRAKGKVVVSIAGDA