Protein Info for mRNA_3499 in Rhodosporidium toruloides IFO0880

Name: 11867
Annotation: K00231 PPOX, hemY oxygen-dependent protoporphyrinogen oxidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 597 transmembrane" amino acids 44 to 63 (20 residues), see Phobius details TIGR00562: protoporphyrinogen oxidase" amino acids 45 to 560 (516 residues), 127.6 bits, see alignment E=2.6e-41 PF13450: NAD_binding_8" amino acids 48 to 99 (52 residues), 28.8 bits, see alignment 1.2e-10 PF01593: Amino_oxidase" amino acids 74 to 554 (481 residues), 47.6 bits, see alignment E=1.7e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (597 amino acids)

>mRNA_3499 K00231 PPOX, hemY oxygen-dependent protoporphyrinogen oxidase (Rhodosporidium toruloides IFO0880)
MRRSLPTKPLRRRTPRLDLIRSLPSPRFFVTSTSSSQRHDQPAHTLAILGGGLSGLSTVH
YFLRTLSPALRDQTRIVVLEKEERVGGWCRAVRVQNGRRLGENEKPEGTDDLLVFETGPR
SIRPVGLLGWLTIEMAHEIGLTSSIVTVPKTAPSARNRFIYTGHRSSTSISPILKAALPT
IPSALLEPFRRRSPLHDDPSGLADESVDSFIARRFGRRLADELASAGIHGIYAGDTRRLS
VRAVLPALWELEKEWGSVVLGAVFGSFARRRGWKKNSPWRVRQQAEVKEMERVKERIRAN
GGEALVEDVEKASVWGVKGGLQVLTETLREKLEVEGVEFWMGEKGNVEHVEKVDGEWQIR
TSTGALNASQLVTTIPQLLPSSLAPPPLPATTVSVVNLAFKKPLPGSPPLHPAGFGYLIP
RTVPPSLNPHHALGVIFDSDVMPDVDSSSSHGLTKLSLLLGGSYWLDRHPPPQPSHDHLV
SAALETLRLHFPDRTIPESVHAYTHTHVHCIPQVPPGFMPSFRAFGDRLREAGNVAVVGG
GFAAVGVNGCVKAAWEVGSAMAQAVNAQAGGKDGEGDEKVREAVARTVKTGTEMWEL