Protein Info for mRNA_3525 in Rhodosporidium toruloides IFO0880

Name: 11893
Annotation: K08139 HXT MFS transporter, SP family, sugar-H+ symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 100 to 121 (22 residues), see Phobius details amino acids 126 to 145 (20 residues), see Phobius details amino acids 157 to 180 (24 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details amino acids 282 to 302 (21 residues), see Phobius details amino acids 317 to 338 (22 residues), see Phobius details amino acids 345 to 364 (20 residues), see Phobius details amino acids 376 to 403 (28 residues), see Phobius details amino acids 423 to 441 (19 residues), see Phobius details amino acids 443 to 465 (23 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 15 to 474 (460 residues), 426.8 bits, see alignment E=5.6e-132 PF00083: Sugar_tr" amino acids 19 to 479 (461 residues), 439.9 bits, see alignment E=1.2e-135 PF07690: MFS_1" amino acids 64 to 330 (267 residues), 56.2 bits, see alignment E=3e-19

Best Hits

KEGG orthology group: K08139, MFS transporter, SP family, sugar:H+ symporter (inferred from 60% identity to scm:SCHCODRAFT_68300)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (553 amino acids)

>mRNA_3525 K08139 HXT MFS transporter, SP family, sugar-H+ symporter (Rhodosporidium toruloides IFO0880)
MGLVFHVNGAPIGALAVLVAVFSSMGGFLFGYDTGQISDFLQMNDFKRRFASCPDLNALD
ACEFSNVRSGLIVSLLSIGTLFGALFGAAIADRLGRKKAIVVDNIVLIIGIIVQISSVSA
WYQFMIGRIIAGLGVGALSAVVPLYQSEIAPKEIRGTLVCTYQLMITAGILVAYCISIGT
RNLEQNGAEWRIPNGLTMFFSLFLMIGILFAPESPRWLFGEGRYDDAEHSLARIRGVKVE
DNDYTVRQTYEEMKAAVEHESRMDKFRWIDCFRPRDKMLYRTVLLAVLQAGQQLTGANYF
FYYGTTVFQSVGNVDPFVSQIILGAVNFGCTFLGLYIMERFGRRWPLIIGGLWQSAWLFV
YAAAGTAKDPTENKSIGTLLIVSSCLFILGYASTWAPGIWTLVGETPRNDARAKTGAIAT
SSNWIWNFLIAFFTPFITGSIGFSYGFVFAGANLFNALFAYFFLYESAGLSLENVDRMYN
DPNIKPWNSHKWVPPGAESRHDYIQGLQAERKTGGEKPVHRELADDGSSHDGTVVGSENP
AKLGKHGRKPEVH