Protein Info for mRNA_3526 in Rhodosporidium toruloides IFO0880

Name: 11894
Annotation: K06666 TUP1 glucose repression regulatory protein TUP1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 669 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF08581: Tup_N" amino acids 107 to 178 (72 residues), 71.4 bits, see alignment E=1.9e-23 PF00400: WD40" amino acids 342 to 371 (30 residues), 20.4 bits, see alignment (E = 2.3e-07) amino acids 397 to 423 (27 residues), 29.3 bits, see alignment (E = 3.4e-10) amino acids 430 to 465 (36 residues), 36.1 bits, see alignment 2.5e-12 amino acids 486 to 517 (32 residues), 32.5 bits, see alignment (E = 3.4e-11) amino acids 521 to 559 (39 residues), 35.7 bits, see alignment 3.4e-12 amino acids 584 to 620 (37 residues), 31.2 bits, see alignment 8.6e-11 amino acids 626 to 662 (37 residues), 17.4 bits, see alignment 2.1e-06 PF12894: ANAPC4_WD40" amino acids 402 to 479 (78 residues), 31.4 bits, see alignment E=5.8e-11 amino acids 485 to 539 (55 residues), 26.1 bits, see alignment 2.6e-09

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (669 amino acids)

>mRNA_3526 K06666 TUP1 glucose repression regulatory protein TUP1 (Rhodosporidium toruloides IFO0880)
MASRGVYEHRSLAAAPLSNPPGSASGVPPPPPSNSTPSAAAQQQAQQQQQGMHPAAIAAA
AAAAAAAAAAQSGHPMNGLMHPPPPGGPPPGPPGAGVVAPPHPSAQRLNDLLEFVKAEFE
QVAGEGSVLRVQRDEYEAMIHTHASELNAMRAMVYDLERKYHDDKRVLQEENSRLQEENS
HLRHQLDTSRSSISSQPGAGRAAGAGGRPGSSGFPVLGGAEANGAQGEHPSKRLRTDEED
RRKSASSARPVPQTGSRPPSTGPGAPPSTHQPSPLPPSSTSLASPAPAPAPPSAKDEKPA
PPAGEVTSFDPGTAPKELKKEGPDWVTMFNPNVKRTLDVGLVHTLVHDSVVCCVRFSPDG
KILATGSNRNTTLYDTKTGARIAQLCDESANQKADNYIRSVSFSPDGKLMATGSEDRIVR
VWNLAHKRISQVFSGHTSEIYSLAFSPDGRRLVSGSGDKTARMWDIETGSCAFTLTIHDI
TIAENGPVDAGVTSVAFSPDGKYLAAGSLDTVVRIWDAETGQLLDKLKGHEDSVYSVAFS
PDSKFLVSGSLDKTLKMFDIAAFKTALAAAPKDAPVGEGGKATLLTTLQGHKDYVLSVDV
SPDSAWILSGSKDRGIQMWSSATAKSQWVLQGHKNSVISVAISPVGGLFATASGDWSSRI
WSYNTLPSA