Protein Info for mRNA_3533 in Rhodosporidium toruloides IFO0880

Name: 11901
Annotation: K08337 ATG7 ubiquitin-like modifier-activating enzyme ATG7

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 691 PF16420: ATG7_N" amino acids 11 to 313 (303 residues), 233.5 bits, see alignment E=4.5e-73 TIGR01381: E1-like protein-activating enzyme Gsa7p/Apg7p" amino acids 13 to 687 (675 residues), 662.2 bits, see alignment E=4.6e-203 PF00899: ThiF" amino acids 336 to 630 (295 residues), 150.3 bits, see alignment E=6.5e-48

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (691 amino acids)

>mRNA_3533 K08337 ATG7 ubiquitin-like modifier-activating enzyme ATG7 (Rhodosporidium toruloides IFO0880)
MATSIQAATPLQFLPLSTSISPSFWHRLTDLKLHHLKLSDDPVPICGWYGRGKQVKDRVT
GESVAISAGLELDNASFDAGTDVGASDASAPSERTRLRGVLRNFNTIEEFKNCDKAKLLN
ELGEQIWQQATSASSSSVTLESLNPFLLITFADLKKYRYYYWCGFPALAQKPGWEIVEEW
REVPLPEPSSTPLHLSRGDESEAGALAGVFSFWANTPADERRIVLSDPSAHPSAPGWPLR
NVLLFLSTSPTFPQPVTSLAITLVRDGQAISARIRRQEGAETTGEGKRPATVGWEKNEKG
KLGPRMADLGPLMDPTRLADQAVDLNLQLMRWRIMPSLDLDKVKNTRCLLLGAGTLGCYV
ARTLMAWGVRNITLVDSSTVSFSNPVRQPLFEFEDSLNGGKPKAQTAAAALKRIYPGVDA
TGISLSIPMPGHPIPPTAQDAIRQDLETLERLVDEHDVVYLLMDSRESRWLPTLIGAAKG
KLVMNVALGFDTFLVMRHGLPTEESAASTPAEIVPGPPYRGQLGCYYCNDVVAPMDSLSD
RTLDQMCTVTRPGIASIASSTAVELMVSILQHPQGALAPSDIPASKDAPAAPSSSSPSSA
SPLGVVPHQIRGFLANFENLKITGHAYERCTGCSQPILDAYRADAFDLVRQSCEDAKYLE
RLTGLDKLEEETEALLAEGLDWDEEDEEAEL