Protein Info for mRNA_3545 in Rhodosporidium toruloides IFO0880

Name: 11913
Annotation: HMMPfam-SAP domain-PF02037,ProSiteProfiles-SAP motif profile.-PS50800,SMART-Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation-SM00513,SUPERFAMILY--SSF68906

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 PF02037: SAP" amino acids 10 to 41 (32 residues), 38.8 bits, see alignment 3e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (244 amino acids)

>mRNA_3545 HMMPfam-SAP domain-PF02037,ProSiteProfiles-SAP motif profile.-PS50800,SMART-Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation-SM00513,SUPERFAMILY--SSF68906 (Rhodosporidium toruloides IFO0880)
MSEQYTESDLKSLTVVKLKELLADRSLPVTGRKDDLITRLLSSTTTTSAGAEATTTLPLP
TTDTTGHASSTDEPDGAGLSGTAEVSAASGAEDLRSAEEKDEGLKSATAPVPEVSEEQKK
ALLAFQAKDEEERRRKRAERFGLSAIQGEKGDEGEEVKRKRAERFGLQNAGEEEAGGEVD
KKMGKSLEALSSALGTSRTRKPKADATSKSAPSAEKSVPQLAGSKKGKDEVKKKQKTDEG
AVVA