Protein Info for mRNA_3551 in Rhodosporidium toruloides IFO0880

Name: 11919
Annotation: K10276 FBXL10_11, KDM2 F-box and leucine-rich repeat protein 10/11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 676 transmembrane" amino acids 245 to 263 (19 residues), see Phobius details PF02373: JmjC" amino acids 117 to 218 (102 residues), 32 bits, see alignment E=1.5e-11 PF17811: JHD" amino acids 222 to 259 (38 residues), 25.7 bits, see alignment 1.4e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (676 amino acids)

>mRNA_3551 K10276 FBXL10_11, KDM2 F-box and leucine-rich repeat protein 10/11 (Rhodosporidium toruloides IFO0880)
MTEPFVVERPEGLGMEMPPPSTTVKDIAELVGPSTPLEVIDCASQSSLSNWTLGQWATYY
EDPQRDKIRNVISLEVSESQLGRMVKAPELVRKLDWVDNVWPDDMKIPGQYPRVQKYCLM
SVERCWTDWHVDFAGSSVFYHVLRGGKTFFFIRPTPANLAAYEKWSGSSEQQEQTWLGDM
VDKVYRVDLKQGNTAFIPTGWIHAVYTPADSLVIGGNFVHSLNISTQLEVYRIEIATRVP
RKFRFPFFVKLLWLVALHYYTFLASPPTPLPADLRSPRVLAGLKDLSSFLIEQTTRFAKG
ANVSNERRKIARENVPWSKVPDPVTLSREFRKAVLKARGEPLDAECFLPHVAHVDEPAAN
GAGGKRKAESLEPDAQAALAAKAKARRTSNGVAPPYGPANGAGGDGEIIGRQTIPVVSVS
RREERIDPRGSAKKGAMVADIRESRSTQSVVRRWEHDPLDPNGKSGPVVETRTVITIVER
VKFPATSSRAYHPYAPSSNSASYQSNGIGPPAPPSITAVPGSAAAMTHHPANLQTQNAAP
YSPYGWPYNYTLTDSNGYALGTAPPPQYQYSAAQPHNYASQPQQSNWNLSSYGSATLPPP
PPQQPTYQSHPGAPSNLPPLPSLPSSSMPPPPLPQPKPSQNAAPSASTLPPPPFSAMPGA
AMLNGQGTAATNGVQQ