Protein Info for mRNA_3556 in Rhodosporidium toruloides IFO0880

Name: 11924
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 532 transmembrane" amino acids 13 to 33 (21 residues), see Phobius details amino acids 71 to 91 (21 residues), see Phobius details amino acids 98 to 117 (20 residues), see Phobius details amino acids 123 to 144 (22 residues), see Phobius details amino acids 156 to 176 (21 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details amino acids 281 to 301 (21 residues), see Phobius details amino acids 314 to 335 (22 residues), see Phobius details amino acids 343 to 364 (22 residues), see Phobius details amino acids 375 to 399 (25 residues), see Phobius details amino acids 411 to 431 (21 residues), see Phobius details amino acids 447 to 467 (21 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 10 to 477 (468 residues), 441.5 bits, see alignment E=1.9e-136 PF00083: Sugar_tr" amino acids 21 to 480 (460 residues), 436.9 bits, see alignment E=9.3e-135 PF07690: MFS_1" amino acids 25 to 425 (401 residues), 57.5 bits, see alignment E=1.2e-19

Best Hits

Swiss-Prot: 50% identical to ECDD_ASPRU: Major facilitator-type transporter ecdD (ecdD) from Aspergillus rugulosus

KEGG orthology group: None (inferred from 62% identity to cne:CNM02570)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (532 amino acids)

>mRNA_3556 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MVTSGVPVPTGQIRPLAVAMASFAAFGGFLYGYDTGYIAGVKEMNTWLRIFGDGAPDANG
VPTLSSGRDSLVTSILSAGTFFGALGAYPVGDTLGRRFGICAYLILFCIGVACQTGAKNI
ATFVVGRVFAGLGVGGTSCLVPMYQAECAPKSIRGAIVSGYQWMITIGLLIAAVVVNGTK
NRSSAAAYQIPIGLQFIWAFILAAGLLVLPESPRWLLLKDKEEKARKALARILSRDPDSQ
EVNEELAEIAANLHHERSIGQTSWLACFSNGEGKNGQRAWTGIGLQALQQLSGINFIFYY
GTTFFRRSGINNPFIITIATNVVNVGATIPGILAVDRVGRRSLLLYGAAAMCVCHFIVAG
TGVGVSADNKAGQKVLIAFVCIFIAHFAATWGPFAWVVTSEIYPLSIRGKCMAMSTASNW
LWNFGIGYATPYLVDNKPGSAGLGSNVFWIWGGACVLCFIFTFFFIYETKGLALEQVDIL
YRNSNALHSNKFRKQILDENLHDEDKEAYYAGAQKNPVEKGEHKEDAVMRDL